Tvap012796.1
Basic Information
- Insect
- Trialeurodes vaporariorum
- Gene Symbol
- L
- Assembly
- GCA_011764245.1
- Location
- HIC:20069561-20103273[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 1.9e-05 0.0013 19.1 1.0 1 23 26 48 26 48 0.98 2 23 0.25 17 6.1 5.9 1 23 54 76 54 76 0.98 3 23 9.6e-07 6.5e-05 23.2 2.3 1 23 82 104 82 104 0.99 4 23 2.2e-05 0.0015 18.9 0.2 1 23 110 132 110 132 0.98 5 23 0.00015 0.01 16.3 0.6 1 23 149 172 149 172 0.98 6 23 0.92 63 4.4 0.4 2 20 278 296 277 300 0.89 7 23 0.78 53 4.6 0.2 3 23 434 454 433 454 0.97 8 23 0.00071 0.048 14.1 0.2 2 23 482 503 481 503 0.96 9 23 0.0005 0.034 14.6 0.3 3 23 513 534 511 534 0.93 10 23 0.039 2.6 8.7 0.3 1 23 539 562 539 562 0.93 11 23 0.19 13 6.5 0.2 1 23 569 595 569 595 0.97 12 23 3.8 2.6e+02 2.4 0.2 2 23 617 638 616 638 0.92 13 23 0.0017 0.12 13.0 0.8 1 23 642 665 642 666 0.97 14 23 0.75 51 4.6 0.5 1 23 734 758 734 758 0.93 15 23 5.5e-05 0.0038 17.6 2.5 2 23 771 792 770 792 0.96 16 23 0.012 0.79 10.3 0.4 1 23 802 824 802 824 0.98 17 23 0.24 17 6.2 0.7 3 23 833 853 832 853 0.97 18 23 0.023 1.5 9.4 0.1 2 23 932 954 932 954 0.96 19 23 1.3 86 3.9 0.4 1 23 958 980 958 980 0.95 20 23 6 4.1e+02 1.8 0.5 2 23 990 1011 989 1011 0.92 21 23 0.0022 0.15 12.6 0.2 1 23 1019 1041 1019 1041 0.95 22 23 2.1 1.4e+02 3.3 1.0 1 23 1048 1070 1048 1070 0.92 23 23 0.0035 0.24 12.0 0.1 1 22 1130 1151 1130 1151 0.94
Sequence Information
- Coding Sequence
- AGTTCGTGTGCGACCCCCAATTCGGCAGCGGAGTCCGATGTGACCTTCACCGTTGGCGTCACCGATGCTACTCCGTACGCTTGTCAATTTTGTGAGAAAGCCTTCCCGCGACTTAGTTATCTCAAGAAGCATGAGCAGACTCACAGCGAGCACATGCCGTTCCGGTGTGAGTTTTGTAGCCGACTATTCAAGCACAAAAGGAGTCGAGATCGGCACATCAAGCTTCACACAGGTGACAAGAAGTACAGGTGCACACAATGCGAGGCAGCTTTTTCCAGAAGCGATCACCTGAAAATCCATATGAAGACTCACGATAATCAGAAACCGTTCCAATGTACAGTTTGCAATAGAGGCTACAACACTGCCGCCGCTCTGACGTCACACATGCAAAATCACAAGAGGTCGCCCACGCCGAATAACAATAACACACCTCCCGGAAGCTCGTATCGCTGCCTTCAGTGTTCGGAGCTCTTCAGAAAACCGGAACAATTACAGAATCATATGTCGACTGCCCACAAGATGGAGCCACCAACAACCAATTCTAGGTCATCAAATAGAGTTAGCCCTTCATTCACGTCTGCCTCTCGGCCGAGGCTGGCCTGCATATATTGCACCAACGACAATTTCACCACCATGGAAGCACTCCAGCTCCACGTTCAAGCCATGCATGGTTCCATTTTGAATGGCGACTTACACCGAGAACTGACTCAGCAACAACTCCCGAGCCCAGGTCAACATTTCATGTCATCCTTGAGTTTGGCAACCTCGGTCGCCGCTGCTGCCCGAACGACAAGTCATCACTCCTCCATCTCCTCATCAATCCTGCCTTTGTCTTGTGATCTGTGCACGATGCGTTTCGGCACCGTCCAAGCTCTCCACAAGCACGCTGTCTTTGTCCACGGTTTTCGTGGCAGCAACTCTGGGCTAAGCAACAGCGGAAAGGATCTGTCACCACTCGATACATCAGGAGGGGGTGGCCCTTTGTTTTGCATTAGATGTGCCCTCCCTTTTCCGTCTCCGGCCTCATTTGCTGAACATTATGTTCTTGTACACGGATCCAGTACGGCCGCGAATATTCTCGGTATCCCTTCACCTGTCCAACTCAAGCCGACGGATTTGTCGTTGACAAAAAAGACCTCCAAGCATCCTAGTCCTAGTCCTGGGCCTCCTGATGAACGGCCGCCTTCGGGAAAAAGATTCAAGGTCAACAGTGAGAATGGTCTATCACCAAACTGTCCTCGACCACGCTCTGTGTCACGGACGCCAACGAGTCATTATGATGAGCCGGGAACTCTTTTGTGTAATCAGTGCAATGCTGCGCTCCCAAATTTTGAGTCATTCCGATCCCATGTGAAAGCGCATATCGAGGAATCAGGAGGGCTCAGAGGTCTTCTGGGCGGTGCGACCAATCTAGAACGGAAGTTGAAGAGTCTTCCGGAAATTCCATGTCCTCACTGCGGCGTTAGTTTCACCTCGATTGAGTCTCAACAGCAGCATGTTCTGACCCATTTTTTGAGCACGGTAACCGAATACGGCTGCCAAAGCTGCAACAAGACCTTTGGCAAACCGGATGAACTGCAAAAACATTTGATGGATATACATACGCATCATCTGTACCGGTGCTCTTTGTGTAAAGAAATATTTGATTCAAAAGTCACAATTCAGGTTCATTTTGCTGTGAACCATAGCAAAGAGTGTAAGCTGTACAGATGCACAGGCTGTCCTTCGTCAGTAGCTACTTATCGCTCAGAAATAGATTTCAATTCACACGTCCGAACAATTCATACGCCTCCCAGCATGAACCTTCTCTCTTCACCAAAACCCATGATTCAGTCTCCTCAGTTGTTGCAATGTTTCTTCTGTCGATTAAGCTTCGGTTCGGAAATTGAGCTTCAGTTCCATTTAGCCATTCACTCAAAACAGTTTCAGTGCCCGTTATGTCCAGAAGCATTCCATGTAGAATTCCTTTTGGATAAGCATATGGAAACCGTCCATCACTCCTCTCAGGTCATGAATGGTAGCGATCAGAGACAGTGTCCCACTCCAAAATCATCCTCAAAACCTTCAATGAACAATTCTGCATCTACTAGAAATTCTTCGACGCCTCAGCCAAATTCACTCCCGACCAGTCGCACGCCTAACGGATGCTCTAGCGTCCAATCAAAGAAGACAGAATTGGGTCATAATGACATTCCAATGCACTCTTGTGATATCTGTGAATGTGCCAATTTTGCAACAGAGGCAGAATTGATTGCTCATAGGAAGTTAGTGCACAATGTGAAAACATCAAATTCTGGAAAGGTTAGTCTACATTGTGCGTACTGCAATGAAAATTTCAAAACGAGGACGGAGTTGGAGAATCATATGAAAAGTCATTCACAAAGTAGTGGTGGGTCTGGAAAACACAAGTGCAATATATGCGATGAGATCTGTCCCTCAGCCGCTGTTTTAGCCGAGCACAAGCTGACTCACTGCAAGGTGCTGTCAGGATCTGCTTGCACTCACTGTAAAATAAACTTGGTTGATGAAGAGCAGTATATGCAGCATTTACAGCAACACAGCAACAACAATCCCAATGTTCAACAACAGCAGTTGGTCTTGCCGACTGCCTGCGTCATCTGTCGGCAGACGCTAGTTTCGGAAATGGAAGCGAAAATCCACGCCCGGTTTCACCTTCATCAATCGGAATCTGCGTCCACTTGCTGTATCTGTTTGCAGCCTTGCGAGCGGCGGGATCTGAATGTTGGCATCTGCGGCGATTGCCTGAGGAAGCAGTCGAAAACATCCATCGCCAGATGTTATGAGTGTCAAATCAATTTTGAAAGTAGCCTTGCGCTTGAGGCGCATCTAGCAACGACGCATCGGAAAAGCTTCCAGTGCATCAAATGTCAGCTAAGTTTCGAGTCGGAGCAAGAAATCCAATTGCATGTCACATCCCACTTACTCTCGGACGGGATGAATGGACTTGAATGCCGGCTTTGTCTGCGAGTACATTCTTCGCCGCTCCAGCTCCAAACTCATCTAATAGAACATACATTTGCAGGCTGTCCAGCGTTCACCTGCTACATTTGTAGCTCTGTTTTCACAACAGCGCAGGGTTTGCAGACTCATATCGTGGAACACGGGCTCGCTGCAAGACCTTATGACTGCCCTCGGTGCAGCTCCAAATTCTTCTTTAGGGCCGAGCTAGATAATCACAGCTTTATTCACCTGGAGGAAGATGCAATTGGCACTGATTTGAGTAAAGCACTTCCATATCACTATCAAAACCGCATGTCTCTGAAAAATTTAAGCAAGACTATTTTAAATAATTCTCACGCGGCTATGGAAACTTTTGACTCCAACAAAAGTAGCAAGAAACAGCCCTCAAATGAATGTCCAGAGCAGTTTGTTTGCTCCGGTTGCCTTAAAGATTTTAGCTCCGAAGAAAGTTTAGAGGCACACTCGAAAACTTGCATAACGAAGAAATCTTCCAACAATTCCAATTCTGACCTAAATTCTGACGAGTTCGAACGGGAGGAAAAATGCCAAGATTTGAGCTGTAGTTTTTCTTCCAACGAGAGCAAACTTTCCAAAGACTGCGATGATGTCTCATCGACAAAGAACGAGGTCATGAGTCCTCCGATCAAGGAGGAAGTGGTCGACGACAATGATAAAGAAATTGATGTCGGAGATAACAATGATGATGCTGTGCCCTAAGAGCCTATGTCTTGAAAAGCTTGGAATTAGTTTCCTTTGAAAGTGGCAAAGAAACAAGACTCATTCAAAATGACTGCCTGTTAAAATTCAGGACGGCATGTTCACTCATATTTCTCCTTTGAGGCGCTTTCAATTTTTTTGTGGAATCTTCCCGATTCTTTGAGTACTTGCTCTGCGTTTTGTGAACTGTCTAATTTTCAATTTCCAAATTTTGTAATGATAGTTTTGCTTTTCGAGCAGTTCTCTCAATGCTCTCTTATTCTTCTTTTTCAACTAATTTTATTGGCAATGCTCCATGTTTGTAAGATCAGGAA
- Protein Sequence
- SSCATPNSAAESDVTFTVGVTDATPYACQFCEKAFPRLSYLKKHEQTHSEHMPFRCEFCSRLFKHKRSRDRHIKLHTGDKKYRCTQCEAAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQNHKRSPTPNNNNTPPGSSYRCLQCSELFRKPEQLQNHMSTAHKMEPPTTNSRSSNRVSPSFTSASRPRLACIYCTNDNFTTMEALQLHVQAMHGSILNGDLHRELTQQQLPSPGQHFMSSLSLATSVAAAARTTSHHSSISSSILPLSCDLCTMRFGTVQALHKHAVFVHGFRGSNSGLSNSGKDLSPLDTSGGGGPLFCIRCALPFPSPASFAEHYVLVHGSSTAANILGIPSPVQLKPTDLSLTKKTSKHPSPSPGPPDERPPSGKRFKVNSENGLSPNCPRPRSVSRTPTSHYDEPGTLLCNQCNAALPNFESFRSHVKAHIEESGGLRGLLGGATNLERKLKSLPEIPCPHCGVSFTSIESQQQHVLTHFLSTVTEYGCQSCNKTFGKPDELQKHLMDIHTHHLYRCSLCKEIFDSKVTIQVHFAVNHSKECKLYRCTGCPSSVATYRSEIDFNSHVRTIHTPPSMNLLSSPKPMIQSPQLLQCFFCRLSFGSEIELQFHLAIHSKQFQCPLCPEAFHVEFLLDKHMETVHHSSQVMNGSDQRQCPTPKSSSKPSMNNSASTRNSSTPQPNSLPTSRTPNGCSSVQSKKTELGHNDIPMHSCDICECANFATEAELIAHRKLVHNVKTSNSGKVSLHCAYCNENFKTRTELENHMKSHSQSSGGSGKHKCNICDEICPSAAVLAEHKLTHCKVLSGSACTHCKINLVDEEQYMQHLQQHSNNNPNVQQQQLVLPTACVICRQTLVSEMEAKIHARFHLHQSESASTCCICLQPCERRDLNVGICGDCLRKQSKTSIARCYECQINFESSLALEAHLATTHRKSFQCIKCQLSFESEQEIQLHVTSHLLSDGMNGLECRLCLRVHSSPLQLQTHLIEHTFAGCPAFTCYICSSVFTTAQGLQTHIVEHGLAARPYDCPRCSSKFFFRAELDNHSFIHLEEDAIGTDLSKALPYHYQNRMSLKNLSKTILNNSHAAMETFDSNKSSKKQPSNECPEQFVCSGCLKDFSSEESLEAHSKTCITKKSSNNSNSDLNSDEFEREEKCQDLSCSFSSNESKLSKDCDDVSSTKNEVMSPPIKEEVVDDNDKEIDVGDNNDDAVP*EPMS*KAWN*FPLKVAKKQDSFKMTAC*NSGRHVHSYFSFEALSIFLWNLPDSLSTCSAFCELSNFQFPNFVMIVLLFEQFSQCSLILLFQLILLAMLHVCKIR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -