Tvap015051.1
Basic Information
- Insect
- Trialeurodes vaporariorum
- Gene Symbol
- Zfy1
- Assembly
- GCA_011764245.1
- Location
- HIC:17410629-17426535[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0016 0.11 13.0 0.5 6 23 257 274 256 274 0.98 2 14 0.00032 0.022 15.2 0.7 1 23 279 302 279 302 0.96 3 14 0.00037 0.025 15.1 0.1 2 20 309 327 308 330 0.91 4 14 3.3 2.2e+02 2.6 0.4 1 20 336 355 336 357 0.89 5 14 0.012 0.83 10.3 0.8 1 23 401 424 401 424 0.96 6 14 0.012 0.78 10.3 1.4 1 23 429 451 429 451 0.94 7 14 0.0045 0.3 11.6 0.8 1 23 457 479 457 479 0.98 8 14 0.0002 0.014 15.9 0.4 1 23 485 507 485 507 0.97 9 14 1.6e-05 0.0011 19.4 0.2 1 23 513 535 513 535 0.99 10 14 0.0008 0.054 14.0 1.4 1 23 541 563 541 563 0.98 11 14 1.7e-06 0.00012 22.4 2.4 1 23 569 591 569 591 0.98 12 14 2.9e-05 0.0019 18.5 8.4 2 23 598 619 597 619 0.98 13 14 2.1e-06 0.00014 22.1 2.0 1 23 625 647 625 647 0.96 14 14 5.1e-07 3.5e-05 24.0 4.1 1 23 653 675 653 675 0.99
Sequence Information
- Coding Sequence
- ATGCAAGCCTCATACGACCATCATGTAGAGGCTTGGTTTGGGAAGGAGCTAAAAATTGTTTTAGACAGAGTGGATAAGGTAAAAGAAGGAAACTCGAGGAGAGGTATAAGGCCTCAGTCAAGATTTCATTGTGATATTCTTTGCACTGACGGCAGTTATCCTGAAAATGCAGTGACAGCCCCAAGCATTTCTTGTGATAAAGATTCTTTGGATGGACCCATAAAAACGGAGAATCAACTCATCTGCGAGAGGGACTTATCTGATCTTGAGCATCTGTTAGTGAATGATTTAGTTCCTAAGGCAGAAATAGACAACAGAGATGTGGAGTTTATTGATCAGCGAATCTTAGTTCCAATTGTAAAGTTAGAAACAGATCGGGACACAGAAGTTGAAACGCCTAATACAGTCACAGGTAGTTTCACAAACTTGTCAACAAATCAAGGTGATATTACGATCTGTGACCTTAGTGCAGAGTGGAAAATGTCAAGCCTGTCTCCTAATGAAATCAACCAAAGTTCTTTTCAGAGTCCACTAAAATGTAAGAGTCGTCTCATTTGTGACAAGGACTCTGCAATAGTGTCTGATAATAAACCTCCGGTAACAAATAATTTAGTTCTGAAGGCAGAAATAGACAAGAGACTTTTGGAATTTAGCGATCCACCATTCTTTGATCCAACCACTGGTTCCAATGCAGCAATTTCTGAGAATGATCAACCATCTGAGCACCTCAAGACACATACAAACCCAAGGCTATTGAAATGTATTCCCTGCAGTTTATCATTCTGTGATAAAGAAAGTTTAAACTCACACATCAAAACACATAAGGGTAAGCCCTTCTACTGTCCTCTTTGCATTGAAAAATTTTCGAAAGAAGATGATCTGAAAAGACACCTCAGGTTAACACATCCCCCCAAAAAATCCGTGGAGTGCCCTCTCTGCAATGCAAAATTTCGTAAACCAAATGAACTGAAAGCACATATGCCAAAACACACTGGCGAAAAACCATATAGTTGCACTCTCTGCATTAAGAATTACAGTGATCAACGTTTCCGGACAATACATCGAATTATGTTCATCTGTGAACTGATAGTCCATGTTTATGCTGATCTAGAATTTCTTGTTATGACTCCAAATGGAAGCCTCATACGACCATCATGTTTGAACTGGAAACATATGCGAAAACACACTGGCGAAAAACCCTATAGTTGCACTCTCTGCATTATGAATTTCATTGATCGTAAGACTCTTAACAGGCATGTACTTATGAAACATACTGAGAAAAAATTTGAATGTGAGCACTGTAAGAAAAAATTTTGGTCTCAAGCTAAGGTAAGGTTGCACATGGTGGCGCACACGGGCAAAAGACCGTATAAATGTACTCTATGCGATGCAAAATTTCCTTTGGAAAGAAGGCTGAAAACTCATCTCGAGAGACACTCTATCAAAAAACCCTATGCATGTACTCAATGTGATGCCAAATTTAATGAAAAGGAACTTTTAAGACGTCATGGCAAAATACACACTGGTGAAAGACCCTATGAATGCGATTATTGTAAAGCACGGTTCATTTTTAAAGCCGCTCTAATTAATCACATAAGAATACACACAGGCGAAAAGCCCTTTAAATGCACTCAGTGTGATTTAAAATTTTCTGCGAAACTCTATTTGACAGAACATGTAAATAGACACAATGGATATAAACGTTTTGAATGCGCTCACTGCAATAAAAAGTTTTATAACAAAGGTTTATTGTTAAAACACATCAGGATACATTCTGGTGAGAAAACCATCAAATGCACTCACTGTAAACGAAAATTTACCAATAAAAACAATCTGCATACCCACCTTAGGACCCACACTGGCGAAAAACCACATGCATGCACTTACTGTGAAAAGAAATTTTCTGCTCGGAGCAATTTAGTAACACACATGAGGATCCACACTGGAGAAAAAACCTACAGATGCAAGCATTGTGATGAAAAATTTCGTTACAAAGGCAGTCTGGAAACACATATCAGGACACATACCAGCGAATGA
- Protein Sequence
- MQASYDHHVEAWFGKELKIVLDRVDKVKEGNSRRGIRPQSRFHCDILCTDGSYPENAVTAPSISCDKDSLDGPIKTENQLICERDLSDLEHLLVNDLVPKAEIDNRDVEFIDQRILVPIVKLETDRDTEVETPNTVTGSFTNLSTNQGDITICDLSAEWKMSSLSPNEINQSSFQSPLKCKSRLICDKDSAIVSDNKPPVTNNLVLKAEIDKRLLEFSDPPFFDPTTGSNAAISENDQPSEHLKTHTNPRLLKCIPCSLSFCDKESLNSHIKTHKGKPFYCPLCIEKFSKEDDLKRHLRLTHPPKKSVECPLCNAKFRKPNELKAHMPKHTGEKPYSCTLCIKNYSDQRFRTIHRIMFICELIVHVYADLEFLVMTPNGSLIRPSCLNWKHMRKHTGEKPYSCTLCIMNFIDRKTLNRHVLMKHTEKKFECEHCKKKFWSQAKVRLHMVAHTGKRPYKCTLCDAKFPLERRLKTHLERHSIKKPYACTQCDAKFNEKELLRRHGKIHTGERPYECDYCKARFIFKAALINHIRIHTGEKPFKCTQCDLKFSAKLYLTEHVNRHNGYKRFECAHCNKKFYNKGLLLKHIRIHSGEKTIKCTHCKRKFTNKNNLHTHLRTHTGEKPHACTYCEKKFSARSNLVTHMRIHTGEKTYRCKHCDEKFRYKGSLETHIRTHTSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -