Tvap013110.1
Basic Information
- Insect
- Trialeurodes vaporariorum
- Gene Symbol
- -
- Assembly
- GCA_011764245.1
- Location
- HIC:36718568-36737077[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.072 4.9 7.8 1.0 1 23 29 51 29 51 0.93 2 21 5.9e-06 0.0004 20.7 1.4 1 21 66 86 66 87 0.95 3 21 0.00014 0.0093 16.4 1.2 1 23 112 135 112 135 0.97 4 21 0.071 4.8 7.9 6.5 1 19 141 159 141 164 0.93 5 21 0.07 4.7 7.9 1.6 1 23 197 219 197 219 0.93 6 21 5.9e-06 0.0004 20.7 1.4 1 21 234 254 234 255 0.95 7 21 0.00014 0.0093 16.4 1.2 1 23 280 303 280 303 0.97 8 21 0.071 4.8 7.9 6.5 1 19 309 327 309 332 0.93 9 21 0.00091 0.062 13.8 3.4 2 23 339 361 338 361 0.93 10 21 7.5e-05 0.0051 17.2 0.7 1 23 367 390 367 390 0.95 11 21 0.00039 0.026 15.0 0.3 1 23 396 418 396 418 0.91 12 21 0.02 1.4 9.6 1.0 1 23 424 447 424 447 0.94 13 21 0.00086 0.058 13.9 0.6 1 23 489 511 489 511 0.96 14 21 0.00051 0.035 14.6 2.5 1 21 530 550 530 551 0.94 15 21 7.5e-06 0.00051 20.4 2.2 1 23 582 605 582 605 0.97 16 21 0.16 11 6.8 3.4 1 22 611 632 611 634 0.90 17 21 0.0075 0.51 10.9 4.3 1 23 640 662 640 662 0.95 18 21 0.14 9.7 6.9 3.9 1 23 668 691 668 691 0.93 19 21 0.41 28 5.4 4.6 1 19 697 715 697 720 0.93 20 21 0.00012 0.0082 16.6 1.1 1 23 726 748 726 748 0.98 21 21 0.00053 0.036 14.5 3.0 1 23 754 777 754 777 0.97
Sequence Information
- Coding Sequence
- GTTAAATCGAGTAAGCTGCTCAAGCCGAACGACGAAGAAACCGACAGTATCACAACGCCTTGCGAAAAGCAAGACCCGGGTCATTTTCTATGTTACAAGTGCGAAGCAAAGTTTGAAGATAAATTGAGCTTTACCAAACATTGGTTGGAACATGTGAAAGATTCGTTTATTAATGATGCATCATCAATTGCTGTTTACACTTGCGACGTGTGCAAGAAAAAATTTAGATCGAAGCAAAGTCTCCGGAAACATATTCTGAATGTTTGTTGTAAAGAATTTTTGCGGTTGGACACCTCGGAAAAACCATCCTCTATTATTAAGAAATCAAAACTTTTTGCATGCACACTTTGTGATTACCGCTCCAAGCAAAAATCATATTTGGACCAACATTTGAGAACCGTTCACTCGAGCCTCAGGCCTTTTCAATGTTCAACTTGTGAATCGTCTTTCAAGAAATCAGATCATCTGCGTAGCCATTGTCTTCAGAAACATTCGAATCTAAAGGTTAAATCGAGTAAGCTGCTCAAGCCGAACGACGAAGAAACTGACAGTATTACAACGCCTTGCGAAAAGCAAGACCCGGGTCATTTTCTATGTTACAAGTGCAAAGCAAAGTTTGAAGATAAATTGAGCTTTACCAAACATTGGTTAGAACATGTGAAAGATTCGTTTATTAATGATGCATCATCAATTGCTGTTTACACTTGCGATGTGTGCAAGAAAAAATTCAGATCGAAGCAAAGTCTCCGGAAACATATTCTGAATGTTTGTTGTAAAGAATTTTTGCGGTTGGACACCTCGGAAAAACCATCCTCTATTATTAAGGAATCAAAACTTTTTGCGTGCACACTTTGTGATTACCGCTCCAAGCAAAAATCATATTTGGACCAACATTTGAGAACCGTTCACTCGAGCCTCAGGCCTTTTCAATGTTCAACTTGTGAATCGTCTTTCAAGAAATCAGATCATCTGCGTAGCCATTGTCTTCAGAAACATTCGAATCTAAAGTCTATCAAATGTTCATCTTGTGACGCCTGTTTCAAGAAGAAATCAAATTTAAATATACATTTTGCTCGTAAGCACTCAGGTGTCAGGCCGTACAAGTGTTCAGCGTGTGACGCTATTTTCAAGACAAAATCCGATTTGTCCAGACATCGTGTCCGAATGCACTCCTCTCACAAACCATTTAAGTGTAGTGAATGCAATCAGTCGTTTCCATTGAAGTCCGGCTTGATGCAGCATGAAGTTGGGCACTCACTTACAAAACCCTTTTCTTGCTCTCTATGCGAGTATCGGTCCAATCGGAAAGGAAACATGAAGATTCATTTTAAAGCAGTTCACGAAAAATGGAAGCCGGGTTCTTCCTGCAATGATCCGCCTAGCTCAAAATCTGAAAGAATCGATGTTACCTCGGCGGCGCCCTGCTCTCCGTCGAAAGACACCAAGGAGTCAAACACGGACCATTTTGTTTGTTACCAATGTGGTGAAGGATTCAAGGAAAAGTTAAACTTTACAAAACATTGGCTAGAGCACGTGAAGGATAAATTAGAAAAAGATGTACCACCACCTACACTTATTATTGACCTTTATTGTTGTGATGTGTGCAAAAAACAATTCAAAGCGAAGCGAAGCCTACGGAGACATATTTTAAGTGTTTGCTTTAAAAACGTTGAGCGTGTGGAAGAGTCCGTCAGTAGTTCTCTTTTGAATGAACCCTCCAATAACCTCCTGAATCAAAAGCGTTTTGTTTGCACATTTTGTGATCACCGTTTCAAGCAAAAATCAGACTTGAACGAACATTTGATAACAGTACACTCGAGCCTAAAGCCTTTCCAATGTTCAACGTGTAATTCATATTTCAAGAGTTCGAAGCGTTTGCATAATCATCGTGTTGCGGTACATTCAACTGAGGTATCTTTCAAATGTCCATCATGCGACTCCTTTTTTAAGACCAAAGGTCTCTTAAAACAGCATTGTAAAGTGCATTCCAAAAACAGGCCGTATAAATGTTCGCTTTGTGACGACCACTTCAAGACGACAGGTGTTTTAAAACGTCATTTTTTGTATAAACACTCCAATGATCGGCCACATAAGTGTTCAGCATGCGGAGCCTTCTTTAAAACGAGATCTCTTGTGAAACAACATTGTATTTATAAGCACTCTAATGATAGGCCATATAAATGTCCATTGTGTGACACTCGCCTCAAAACAAAAGGACAAATAAAACGCCACACTTTAATGCACTCAAATCACAAGGCTTATCAGTGTCCAACTTGTTATGTTCTCTTTAAAAGGAAAGGTGATTTGACAAAACACCATATCCGAAAGCACTCCAATGACGACCCATCCTAG
- Protein Sequence
- VKSSKLLKPNDEETDSITTPCEKQDPGHFLCYKCEAKFEDKLSFTKHWLEHVKDSFINDASSIAVYTCDVCKKKFRSKQSLRKHILNVCCKEFLRLDTSEKPSSIIKKSKLFACTLCDYRSKQKSYLDQHLRTVHSSLRPFQCSTCESSFKKSDHLRSHCLQKHSNLKVKSSKLLKPNDEETDSITTPCEKQDPGHFLCYKCKAKFEDKLSFTKHWLEHVKDSFINDASSIAVYTCDVCKKKFRSKQSLRKHILNVCCKEFLRLDTSEKPSSIIKESKLFACTLCDYRSKQKSYLDQHLRTVHSSLRPFQCSTCESSFKKSDHLRSHCLQKHSNLKSIKCSSCDACFKKKSNLNIHFARKHSGVRPYKCSACDAIFKTKSDLSRHRVRMHSSHKPFKCSECNQSFPLKSGLMQHEVGHSLTKPFSCSLCEYRSNRKGNMKIHFKAVHEKWKPGSSCNDPPSSKSERIDVTSAAPCSPSKDTKESNTDHFVCYQCGEGFKEKLNFTKHWLEHVKDKLEKDVPPPTLIIDLYCCDVCKKQFKAKRSLRRHILSVCFKNVERVEESVSSSLLNEPSNNLLNQKRFVCTFCDHRFKQKSDLNEHLITVHSSLKPFQCSTCNSYFKSSKRLHNHRVAVHSTEVSFKCPSCDSFFKTKGLLKQHCKVHSKNRPYKCSLCDDHFKTTGVLKRHFLYKHSNDRPHKCSACGAFFKTRSLVKQHCIYKHSNDRPYKCPLCDTRLKTKGQIKRHTLMHSNHKAYQCPTCYVLFKRKGDLTKHHIRKHSNDDPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -