Basic Information

Insect: Trialeurodes vaporariorum
Gene Symbol: -
Assembly: GCA_011764245.1
Location: HIC:34797470-34799176[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00058 0.039 14.4 4.1 1 22 93 114 93 114 0.97

2 15 9e-05 0.0061 17.0 3.1 1 23 151 175 151 175 0.95

3 15 0.00018 0.012 16.0 0.6 4 23 186 205 185 205 0.96

4 15 0.0087 0.59 10.7 1.3 4 23 216 235 215 235 0.96

5 15 9.5e-06 0.00065 20.0 1.8 1 23 241 265 241 265 0.96

6 15 0.0012 0.085 13.4 3.2 1 23 271 295 271 295 0.95

7 15 0.00013 0.0085 16.5 1.9 1 23 301 325 301 325 0.96

8 15 0.00025 0.017 15.6 2.8 2 23 332 355 331 355 0.93

9 15 5.5e-06 0.00037 20.8 1.5 1 23 361 385 361 385 0.96

10 15 1e-05 0.00069 19.9 1.2 1 23 391 415 391 415 0.96

11 15 0.0042 0.29 11.7 2.1 1 23 421 445 421 445 0.97

12 15 0.00016 0.011 16.2 2.2 1 23 451 475 451 475 0.96

13 15 0.0012 0.085 13.4 3.2 1 23 481 505 481 505 0.95

14 15 9.5e-06 0.00065 20.0 1.8 1 23 511 535 511 535 0.96

15 15 1e-05 0.00069 19.9 1.2 1 23 541 565 541 565 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00058	0.039	14.4	4.1	1	22	93	114	93	114	0.97
2	15	9e-05	0.0061	17.0	3.1	1	23	151	175	151	175	0.95
3	15	0.00018	0.012	16.0	0.6	4	23	186	205	185	205	0.96
4	15	0.0087	0.59	10.7	1.3	4	23	216	235	215	235	0.96
5	15	9.5e-06	0.00065	20.0	1.8	1	23	241	265	241	265	0.96
6	15	0.0012	0.085	13.4	3.2	1	23	271	295	271	295	0.95
7	15	0.00013	0.0085	16.5	1.9	1	23	301	325	301	325	0.96
8	15	0.00025	0.017	15.6	2.8	2	23	332	355	331	355	0.93
9	15	5.5e-06	0.00037	20.8	1.5	1	23	361	385	361	385	0.96
10	15	1e-05	0.00069	19.9	1.2	1	23	391	415	391	415	0.96
11	15	0.0042	0.29	11.7	2.1	1	23	421	445	421	445	0.97
12	15	0.00016	0.011	16.2	2.2	1	23	451	475	451	475	0.96
13	15	0.0012	0.085	13.4	3.2	1	23	481	505	481	505	0.95
14	15	9.5e-06	0.00065	20.0	1.8	1	23	511	535	511	535	0.96
15	15	1e-05	0.00069	19.9	1.2	1	23	541	565	541	565	0.96

Sequence Information

Coding Sequence: ATGGGGTTTTCGTCACCATTTTACGTCAAAGTTCATGCAAAATACTGCAAAAAAGCTCGAAAAACAGCTGGAAAAAACCAAGAGAGAAACACTGAAATGCCTTCCACTCAGACTGGACAATATTCTTTCAAAGTCTGTGTAATTTGTGAAAAGAATGTGGTTTTTTCGTGCGAAACTGTATCCCGAACGACACCCAATTGTAATAATTGCATCATCCCTCGTAATTTTGACGGAACAATGAAAAATGTTAAAAATAAGAAATTGAGAGTCAAACTATTTAAATGTCACCATTGCTCTCAATATTTTTTTCAAAAATGGGCCTTACTTCGGCACTTAAGAACAAACACACGACAGAAACCATACGACTGCCCTGTCCCTGAATCCGTAGCTGGAATTAGTCGGAAAACTATTTTGTCAGAACATAAAAGAACTGACACAGGAGAGAAAAAATATGCCTGCACATATCCTAATTGCTCAGCTACATTTAAACAAAGTTGTAATTTGTCTAAACATATGAAAACTCACACAGGAGAGAAACCCTATGCCTACACTCATCCTGAATGCTCAGCTAGATTTAGTCAAAGTGGTAATTTGTCTACACATATGAAAACTCACACAGGGGAGAAACCCTACGCCTTCACTCATCCTGAATGCTCAGCTAGATTCAAGTATCGTGGTAATTTGTCTACACATAAGAAAACTCACACAGGAGAGAAACCCTATGCCTGCACTCATCCTGAATGCTCAGCTAGATTTAGTCAGAGTAGTAGTTTGTCTAGACATATGAAAACTCACACAGGAGAGAAACCCTATGCCTGCACTCATCCTGAATGCTCAGCTAGATTTATTCAGAAATGTGATTTGTCAAAACATATGAGAAATCACACAGGAGAGAAACCCTATGCCTGCACTCATCCTGAATGCTCAGCTAGATTCAAGTATCGTGGTAATTTGTCTACACACATGAAAACTCACACAGGAGAGAAACCCCATGCCTGCACTCATCCTGAATGCTCAGCTAGATTTAAAAGGAGTGGTGATTTGTCTCAACATATGAAAACTCACACAGGAGAGAAACCCTATGCCTGCACTCATCCTGAATGCTCGGCTGAATTTAGAACCAGTAGTAATTTGTCTAGACATATGAAAACTCACACAGGAGAGAAACCCTATGCCTGCACTCATCCTGAATGCTCAGCTAGATTTAGTGACCGTGGTAATTTGTCTAGACATATGAAAACTCACACAGGAAAGACACCCTATGCCTGCACTCATCTTGAATGCTCAGCTAGATTCAAGTATAGAGGTAGTTGGTCAACACATATGAAAACTCACACAGGAGAGAAACCCTATGACTGCACTCATCCTGAATGCTCAGCTAGATTCAAGTATCGTGGTAATTTGTCTACACATATGAAAACTCACACAGGAGAGAAACCCTATGCCTGCACTCATCCTGAATGCTCAGCTAGATTTATTCAGAAATGTGATCTGTCAAAACATATGAGAAATCACACAGGAGAGAAACCCTATGCCTGCACTCATCCTGAATGCTCAGCTAGATTTAGTCAGAGTAGTAGTTTGTCTAGACATATGAAAACTCACACAGGAGAGAAACCCTATGCCTGCACTCATCCTGAATGCTCAGCTAGATTTAGTGACCGTGGTAATTTGTCTAGACATATGAAAACTCACACAGGAAAATAA
Protein Sequence: MGFSSPFYVKVHAKYCKKARKTAGKNQERNTEMPSTQTGQYSFKVCVICEKNVVFSCETVSRTTPNCNNCIIPRNFDGTMKNVKNKKLRVKLFKCHHCSQYFFQKWALLRHLRTNTRQKPYDCPVPESVAGISRKTILSEHKRTDTGEKKYACTYPNCSATFKQSCNLSKHMKTHTGEKPYAYTHPECSARFSQSGNLSTHMKTHTGEKPYAFTHPECSARFKYRGNLSTHKKTHTGEKPYACTHPECSARFSQSSSLSRHMKTHTGEKPYACTHPECSARFIQKCDLSKHMRNHTGEKPYACTHPECSARFKYRGNLSTHMKTHTGEKPHACTHPECSARFKRSGDLSQHMKTHTGEKPYACTHPECSAEFRTSSNLSRHMKTHTGEKPYACTHPECSARFSDRGNLSRHMKTHTGKTPYACTHLECSARFKYRGSWSTHMKTHTGEKPYDCTHPECSARFKYRGNLSTHMKTHTGEKPYACTHPECSARFIQKCDLSKHMRNHTGEKPYACTHPECSARFSQSSSLSRHMKTHTGEKPYACTHPECSARFSDRGNLSRHMKTHTGK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -