Tvap004697.1
Basic Information
- Insect
- Trialeurodes vaporariorum
- Gene Symbol
- -
- Assembly
- GCA_011764245.1
- Location
- HIC:19010982-19014488[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.22 15 6.3 0.6 2 21 202 221 201 222 0.94 2 23 1 70 4.2 3.6 1 23 257 279 257 279 0.96 3 23 0.012 0.8 10.3 1.0 2 23 281 302 280 302 0.96 4 23 0.0006 0.041 14.4 2.4 1 23 320 343 320 343 0.97 5 23 7.1e-05 0.0048 17.3 0.5 1 21 411 431 411 432 0.96 6 23 0.002 0.14 12.7 0.5 1 23 547 569 547 569 0.97 7 23 7.3 5e+02 1.5 0.2 9 21 590 602 588 603 0.88 8 23 0.25 17 6.1 0.6 1 23 614 637 614 637 0.93 9 23 0.067 4.6 7.9 1.1 1 23 643 666 643 666 0.97 10 23 0.0068 0.46 11.1 0.9 1 23 671 693 671 693 0.98 11 23 0.015 1 9.9 2.1 1 20 703 722 703 726 0.95 12 23 1.1 74 4.1 0.6 1 23 744 767 744 767 0.89 13 23 0.01 0.68 10.5 0.8 1 21 773 793 773 794 0.95 14 23 0.00082 0.056 14.0 2.4 2 23 803 824 802 824 0.96 15 23 0.056 3.8 8.2 0.3 2 23 831 853 830 853 0.96 16 23 0.00031 0.021 15.3 0.2 1 23 859 881 859 881 0.98 17 23 0.002 0.14 12.7 0.1 1 23 886 908 886 908 0.96 18 23 1.6e-05 0.0011 19.4 2.3 1 23 914 936 914 936 0.98 19 23 0.00037 0.025 15.0 2.0 1 23 943 965 943 965 0.93 20 23 2.3e-05 0.0015 18.9 1.5 1 23 971 993 971 993 0.97 21 23 7.3e-06 0.00049 20.4 0.2 1 23 999 1021 999 1021 0.98 22 23 2.6e-05 0.0018 18.7 3.0 1 23 1027 1049 1027 1049 0.99 23 23 2.1e-05 0.0015 18.9 0.7 1 23 1055 1078 1055 1078 0.98
Sequence Information
- Coding Sequence
- ATGAATTATACTGATCTTACCATAGAACCAATAAAAATTGAAAACGACGAATTCGATGAGGAGGCACTTAGTCTTGCAGAGACAAGTCTCTTTGAATCAAACTTTGATGTTGATCACAGTGGAAACACCATGACACAAGAAGTAGATGCTGACAAGAGCACTGGAGGAATTCATTGTGATAGTGTCTTAACTGTTGGTGAAAGCTATGAAGAATTTCCTCGTGAAAATCCAGTCAAAGTTGAGGTAGATACTGATGGTGAAAATGATACAATTGAGGTTATTATTCAGGATCCGCAGGAAAACACTATTATTACTGAAGATTATGTCCTTGCTGAGACGGAGATTCCGATTCCTAGTACTGTGGATTTTGAACATTCCCTAACTTCTCATGACTCCCAAGATCCACTAGAATGTCTTCACAGTAATGATGTTTTCAAACGTCAAAGCACCAGAGTTCGTAAATTACCAAAAAAATTAACTGAAGCTGAAGGTCATTCTAATGTAATTGTGAAACAGAGAAAAATTATTGACATAAAAACTGACAGAAGCATCAAGTATTTTGATGATCAATCAAGAGTGATACTTTCTAATAATCAAACTTTACAATGTACTTCTTGCTCGGCAGCATTCCACTCTGCAAGAACCTTACTGCAGCATTTAAAAAAATGTAATTCCCGTCATAATGTCCATCCATTTGATCAGTTTCCTAAAGAGTGTCCCTCTTCTGCAGGCTTAAAATGTCACCCTAAAAAGCATCAAATAGTTAAGTATAATTGCCATCAGTGCTGTCTTCAATTTAACACCTTGAATGATCTAAATCTCCATTTAATAGAACATCTTACCTGTGTTAAGTGTGCCCTGCAGTTTTCTTCACATGCTGATCTAGAACTTCATTTGAAAAAGCATGTGGAAGTGTCTGCAAAGTCATCCAATAAGTCATCAAAATCTGATTTGTCTTATGCTTGCACAGAGTGCTTCCGTAAATTCAAATCACCGCTCCTCTTGAATCATCACTTGAAGGTTCGCCATGGGGAAAAATTAATCGATAGAATAAATCTAGTTCCAAACTTTTCACCCTCGGTTCTTCTGCACCGTGTTGGAAGTGATCAAAATCCACAGTGCCAAGAAAGGAACAATGAGTCAAGCTTGCACCCCAAGTGTCCGCCTGGTTTTCAACCTCTTTTAAATCATTGCCTAGAAAATCAACAAGCTACAAAATCTGCCCAGTCATATTCATGTCTGAAGTGTTCTCGTAGTTTTCGTCGTCCAGGTTACTTGAAACTCCATCTTAGGGGAGATTGCATGAAAAAGGCAACTATAACCTCACACAGCTTGAAAAAGGTTAAGCTTGGCAGTGATTCAATGCTAGCAGACACTGTTTCAACACCCCGCGGTGAGAAGTCTACGACTCCTGTCAGAAACATGATCCATGGCTCAGAACATTTTGATTGTGAGCCGGTGTCATCTGATCTTGAAGCTGCTCATTCTGTTGGTGAAACATCTGCAGTTACTAGCGCCACCAGACGTTCAAACGGTTTACAGAGATCTTCCCGTCAACAGCCACGCAGAGGCCAGAGTTCAAAATTATCCTCTATCAACTCGGAAAAAAGTTCACAACCTCGCAAGCCCCTAGAAAAATATGCATGCCCCAAGTGCCCAGTAAAATTCAGACTCAAAACGCGTTTGATATCTCATTTAAAATTACATTCAAAGAAAACAAAAGGAAGTAAAAAAGTGAAGGAACGTAAGCTTACAAAGCACTCTATAAAATTCAGGTCCAAAACTGACTTGAACAGTCACTCAAGATCACAGAGATACTCAGTCAACAAACGGGGCTCCTTCCCTTGCTGCGTTTGTTCTGCCGCTTTCCCCACCAAGATAAAGTTAGCAGGGCATTATTCAAATTTTCATCCAAATGAAAAGCCTTACCAGTGTCGAGAATGTCCGGGCAAATTTGCTCGTGAACGTATCCTTCATAATCACATGTATACAGTTCATGGCGAAAGGAAGTATGAATGCGCAGAATGTCAAGCCAAATTCAAATCGAAGGTTGGCATAAGAGTGCATTTGAAACATCATGAGCTAACCCGTGCCTCCTTAAAACCCTTCATGTGCAGTAAGTGTCCGTCAAGGTTCCTAACCAAAGGTAATTTGACTCGACACATGATTTGTGTCCACGATCCTGAGCATGTACCTCCCAGGAAAATAAGTGCCCCCCTTGAGAAGTGTTTCAAGTGTCAATATTGCCCGCGATGGTTTCTTGCCCAAGCACCATTGACTACACACATGAGCAAGAAGCATTCTAATGAAAAGCCGTTTTCGTGTTCACATTGTCCTCTCAAATTCGGTGACTCAAAAGCATTTAGAGAACACGAAAGAAATGGCTGTCAGTCGATGATTCATCTGAAATGCTCGCATTGCCCAAGGACTTTCAATTCTCTTCGTAATGTCAAGCAGCACGAGATTTCGCACACTGGAAAGGTACCGATTGAGTGTCCTGAATGTAAAAATGTGTATTTATCCCAACAAAGTTTTACTACGCATATTAAGAAGGCTCATTTAGACCTTAAACCATATAGTTGTAACGAATGCCCGCTAAAATTTCGCTCCACCATAGGCTTGAAAAACCATTTAGCCGTACACACCGGAAAAAAGTATTTATGTGAAATTTGTGCTTTCCAATTTCCATTGTCAAGCAGTTTGAAAGCGCACATGGTCACACACAAAGAGGAAAGAATCTATAAATGCGAACATTGTTCAGCCTCATTCAAGCGTAAAAATAATTTGAGTCTTCATATCGCTTCCCACATGCCTGATCGCAAGACTTTTGCATGCAACGTTTGTTCCCAGAAATTTAAGACACCGGCACACTTGAGACAACACTCTGTGAAGCACAGTGGTGAGAGACCCTTTGCCTGTGATTTTTGTCCAAAAACTTTTGGACAACTTTCAACATTGAAAAGGCACAAAATGAGGCATACTGGAGAGAAACCATTTTCTTGTGAACTTTGCCCTGCTCAATTCGTTCAGAAAGGTAATTTGCAAACGCACATGAAAATTCATTTGAACGAAAAACCTTACAAATGTACTGTGTGCTCTGTCAGTTTTCGTCAGATGAGTCATCTTCAGGTCCATGAACGAAAACATAAAGAGGAAAAACCATTCCAGTGTCCCCTCTGTGATGCTAGATTCAGACAGGAAAGTAATGTGGAAACGCATTTAAAGAAGAAGCATATGAGAAAGCTTTTAAAAAATACTTCAGAATCAGAGACAGAAGACCCTGACAGTCCTCCAGATCCCGAGGCAGAAGAACCAGAAACCCCTCTGGAATCAGAAGAAGAAGAACCATCATCTCCTCCAGAATCACTGGTTGCTGAACCTGATACTCCTCTAGGAAGGGAAACACCATCAGAATCAGAGGCTGAAGAATCAATGCCTCATCCAGAACCAGATGCAGGGGAACCGGAAACCCCTCCAGAATCAGAAGAAGAACCTGAATCTCCATAG
- Protein Sequence
- MNYTDLTIEPIKIENDEFDEEALSLAETSLFESNFDVDHSGNTMTQEVDADKSTGGIHCDSVLTVGESYEEFPRENPVKVEVDTDGENDTIEVIIQDPQENTIITEDYVLAETEIPIPSTVDFEHSLTSHDSQDPLECLHSNDVFKRQSTRVRKLPKKLTEAEGHSNVIVKQRKIIDIKTDRSIKYFDDQSRVILSNNQTLQCTSCSAAFHSARTLLQHLKKCNSRHNVHPFDQFPKECPSSAGLKCHPKKHQIVKYNCHQCCLQFNTLNDLNLHLIEHLTCVKCALQFSSHADLELHLKKHVEVSAKSSNKSSKSDLSYACTECFRKFKSPLLLNHHLKVRHGEKLIDRINLVPNFSPSVLLHRVGSDQNPQCQERNNESSLHPKCPPGFQPLLNHCLENQQATKSAQSYSCLKCSRSFRRPGYLKLHLRGDCMKKATITSHSLKKVKLGSDSMLADTVSTPRGEKSTTPVRNMIHGSEHFDCEPVSSDLEAAHSVGETSAVTSATRRSNGLQRSSRQQPRRGQSSKLSSINSEKSSQPRKPLEKYACPKCPVKFRLKTRLISHLKLHSKKTKGSKKVKERKLTKHSIKFRSKTDLNSHSRSQRYSVNKRGSFPCCVCSAAFPTKIKLAGHYSNFHPNEKPYQCRECPGKFARERILHNHMYTVHGERKYECAECQAKFKSKVGIRVHLKHHELTRASLKPFMCSKCPSRFLTKGNLTRHMICVHDPEHVPPRKISAPLEKCFKCQYCPRWFLAQAPLTTHMSKKHSNEKPFSCSHCPLKFGDSKAFREHERNGCQSMIHLKCSHCPRTFNSLRNVKQHEISHTGKVPIECPECKNVYLSQQSFTTHIKKAHLDLKPYSCNECPLKFRSTIGLKNHLAVHTGKKYLCEICAFQFPLSSSLKAHMVTHKEERIYKCEHCSASFKRKNNLSLHIASHMPDRKTFACNVCSQKFKTPAHLRQHSVKHSGERPFACDFCPKTFGQLSTLKRHKMRHTGEKPFSCELCPAQFVQKGNLQTHMKIHLNEKPYKCTVCSVSFRQMSHLQVHERKHKEEKPFQCPLCDARFRQESNVETHLKKKHMRKLLKNTSESETEDPDSPPDPEAEEPETPLESEEEEPSSPPESLVAEPDTPLGRETPSESEAEESMPHPEPDAGEPETPPESEEEPESP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -