Basic Information

Insect: Trialeurodes vaporariorum
Gene Symbol: -
Assembly: GCA_011764245.1
Location: HIC:11733832-11735480[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 1.8e-06 0.00012 22.3 0.5 1 23 14 36 14 36 0.99

2 17 7.1e-06 0.00048 20.4 1.5 1 23 42 64 42 64 0.97

3 17 0.00026 0.018 15.5 2.4 3 23 72 92 70 92 0.95

4 17 4.5e-06 0.00031 21.1 1.5 1 23 98 120 98 120 0.98

5 17 0.041 2.8 8.6 0.5 9 23 134 148 127 148 0.95

6 17 0.0091 0.62 10.7 0.3 1 17 154 170 154 171 0.93

7 17 5.6 3.8e+02 1.9 0.0 5 17 186 198 185 199 0.89

8 17 7.9e-07 5.4e-05 23.4 0.9 1 23 222 244 222 244 0.98

9 17 1.1e-05 0.00073 19.9 0.4 3 23 252 272 250 272 0.98

10 17 1.5e-06 0.0001 22.6 2.9 1 23 278 300 278 300 0.98

11 17 5.4e-05 0.0037 17.7 3.7 1 23 306 328 306 328 0.98

12 17 0.0065 0.44 11.1 0.2 3 23 336 356 334 356 0.98

13 17 2.2e-05 0.0015 18.9 0.4 3 23 364 384 362 384 0.98

14 17 0.0002 0.014 15.9 0.8 1 23 390 412 390 412 0.97

15 17 0.35 24 5.7 2.4 10 23 427 440 424 440 0.92

16 17 0.0014 0.093 13.3 1.6 3 23 448 468 446 468 0.98

17 17 0.00073 0.049 14.1 1.4 3 23 476 496 474 496 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	1.8e-06	0.00012	22.3	0.5	1	23	14	36	14	36	0.99
2	17	7.1e-06	0.00048	20.4	1.5	1	23	42	64	42	64	0.97
3	17	0.00026	0.018	15.5	2.4	3	23	72	92	70	92	0.95
4	17	4.5e-06	0.00031	21.1	1.5	1	23	98	120	98	120	0.98
5	17	0.041	2.8	8.6	0.5	9	23	134	148	127	148	0.95
6	17	0.0091	0.62	10.7	0.3	1	17	154	170	154	171	0.93
7	17	5.6	3.8e+02	1.9	0.0	5	17	186	198	185	199	0.89
8	17	7.9e-07	5.4e-05	23.4	0.9	1	23	222	244	222	244	0.98
9	17	1.1e-05	0.00073	19.9	0.4	3	23	252	272	250	272	0.98
10	17	1.5e-06	0.0001	22.6	2.9	1	23	278	300	278	300	0.98
11	17	5.4e-05	0.0037	17.7	3.7	1	23	306	328	306	328	0.98
12	17	0.0065	0.44	11.1	0.2	3	23	336	356	334	356	0.98
13	17	2.2e-05	0.0015	18.9	0.4	3	23	364	384	362	384	0.98
14	17	0.0002	0.014	15.9	0.8	1	23	390	412	390	412	0.97
15	17	0.35	24	5.7	2.4	10	23	427	440	424	440	0.92
16	17	0.0014	0.093	13.3	1.6	3	23	448	468	446	468	0.98
17	17	0.00073	0.049	14.1	1.4	3	23	476	496	474	496	0.97

Sequence Information

Coding Sequence: ATGAGTAAATTCATCAGGACGGAGACTGGGGACAAAACTTTTAAATGTGCTGGCTGCAATAATAAATTTCCGTCAAAAGGTTCACTGATTAAACACATTAGGACTCATTCCGGTGTAAAACCTTTTGCATGCACTCAATGCGATGCTAAATTTTCTCAGAAATCCTCTCTGAAAATTCACAGTAAGACGCATTCTGGTGAGAAATCCTTTGGATGTGCTCACTGCAATGCTAAATTTTCTCAGAAATCCAGTTTGAATCGTCACTCTACGATACACACTGGTGAGAAACCCTTTGAATGTGCTCACTGCAATGCTAAATTTTCTCAGAAAGGCTCTCTGAAAATTCACGCTAGGACGCATACTGGTGAGAAACCCTTTGAATGCACTCAGTACTCTGCTAAATTTTCTCAGAAAGCTCATCTGATTATTCACACTAGAATGCATACTGGTGAAAAACCTTTTGCATGCACTCAATGTGAAGCTAAATTTTCTCGGAAATCCTCTTTGAAAATTTACACTAGGACGCATACTGATGAGAAACCCTTTGGATATGCTGACTGCAATGTTAAATTTTCTCAAGAAAGTACACTATTAAACACATTAGGACTCATTCTGAGATCCTCTTTGCATGGCCATGTTAAGACACATACCGGTGAGAAACTCTTTGAATGCACTTTATGTGAAGCTAAATTTTCTCAGAAATCCAATCTGAAAATTCACGCTAGGACGCATACTGGTGAGAAATCCTTTGGATGCACTCTGTGCGATGCTAAATTTTCTCGGAAAGACAATCTGACAGATCATGCTAGGATACATAATGGTCAGAAACCCTTTGAATGTGCTGAATGTGATGCTAAATTTTCTCATAAATCAACTCTGAAAAATCACACTAGGACTCATACTGGTGAGAAACCCTTTGAATGCTCTCTATGTGAAGCTAAATTTTCTCAGAAATCCTGTCTGAAAATTCACACTAAGACGCATACTGGTGAGAAACGCTTTGGATGCACTCAGTGCAATGCAAAATTTTCTCTGAAAGCTCCTCTGATTATTCACACTAGAGTGCATACTGGTGAGAAACCCTTTGGATGCACTCAGTGCGATGCTAAATTTTCTCGGAAAGACTATCTGACAGTTCATGCTAGGATACATACTGGGCAGAAACCCTTTGAATGCGCTCAATGTGATGCTAAATTTTCTCATAAACCCTCTCTGGAAAGTCACACTGGGACACATACTGGCGAAAAACCCTTTAAATCCACTCAAGGTAAAGCTAACTTTTTTCGGAGATCCTCTCTGCATCAGCACATTAAGACACATACTGGTGAGAAACCCTTTGGATGCGCTGACTGCAATGCAAAATTTTATTTAAAATCTCATCTGATTTATCATACTAGAATGCATATTGGTGAGAAACCCTTTGGGTGCGCTCAATGTGACGCTAAATTTTCTCATGGATCCTCTCTGAAAAGTCACACTAGGATACATAGTGGTGAAAAACCCTTTTGGATGCGCTGA
Protein Sequence: MSKFIRTETGDKTFKCAGCNNKFPSKGSLIKHIRTHSGVKPFACTQCDAKFSQKSSLKIHSKTHSGEKSFGCAHCNAKFSQKSSLNRHSTIHTGEKPFECAHCNAKFSQKGSLKIHARTHTGEKPFECTQYSAKFSQKAHLIIHTRMHTGEKPFACTQCEAKFSRKSSLKIYTRTHTDEKPFGYADCNVKFSQESTLLNTLGLILRSSLHGHVKTHTGEKLFECTLCEAKFSQKSNLKIHARTHTGEKSFGCTLCDAKFSRKDNLTDHARIHNGQKPFECAECDAKFSHKSTLKNHTRTHTGEKPFECSLCEAKFSQKSCLKIHTKTHTGEKRFGCTQCNAKFSLKAPLIIHTRVHTGEKPFGCTQCDAKFSRKDYLTVHARIHTGQKPFECAQCDAKFSHKPSLESHTGTHTGEKPFKSTQGKANFFRRSSLHQHIKTHTGEKPFGCADCNAKFYLKSHLIYHTRMHIGEKPFGCAQCDAKFSHGSSLKSHTRIHSGEKPFWMR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -