Tvap014745.1
Basic Information
- Insect
- Trialeurodes vaporariorum
- Gene Symbol
- -
- Assembly
- GCA_011764245.1
- Location
- HIC:4177566-4180010[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 7.2e-05 0.0049 17.3 4.0 1 23 337 359 337 359 0.98 2 17 2.1e-05 0.0015 18.9 1.2 1 23 365 387 365 387 0.99 3 17 0.00055 0.037 14.5 2.3 1 23 393 415 393 415 0.96 4 17 4.2e-06 0.00029 21.1 3.9 1 23 421 443 421 443 0.99 5 17 0.00047 0.032 14.7 2.0 1 23 449 471 449 471 0.98 6 17 2e-05 0.0013 19.1 2.3 1 23 477 499 477 499 0.99 7 17 6e-06 0.00041 20.7 3.4 1 23 505 527 505 527 0.98 8 17 0.00012 0.0082 16.6 1.9 1 23 533 555 533 555 0.99 9 17 2e-05 0.0013 19.1 2.3 1 23 561 583 561 583 0.99 10 17 6e-06 0.00041 20.7 3.4 1 23 589 611 589 611 0.98 11 17 0.00012 0.0082 16.6 1.9 1 23 617 639 617 639 0.99 12 17 1.4e-06 9.5e-05 22.7 1.5 1 23 645 667 645 667 0.99 13 17 0.089 6.1 7.5 1.6 1 22 673 694 673 695 0.89 14 17 0.0018 0.12 12.9 2.2 1 23 701 723 701 723 0.98 15 17 0.013 0.9 10.1 4.3 1 23 729 751 729 751 0.98 16 17 4.9e-06 0.00033 21.0 2.8 1 23 757 779 757 779 0.99 17 17 4.5 3e+02 2.2 4.0 1 23 785 807 785 807 0.97
Sequence Information
- Coding Sequence
- ATGTTTGGTCGTGGGTCAAAGCACCCAACACAACCCTCCACAAAAATTGGATCTCAAAAGTATGTTACTTTCAATTCGGGGGATGCAGGCAACAACAGAACTATAATGATGAAGGAGGAAAAAGTGGAAGCATGGTTCGGGAAGCAGCTGAGAATCATTTTGGAAAGAGTGGATAAGGTCAAAGAGGAGAAAGCAAGTAAAGAGGGGAGACCTCAATCAGGATCTCACCTCAATGACACCTTTGCATCGGGCAAAGGTGAGCATGAAAATCAAGCAGTGCCTGCTGGGTTTTCATGTCATGACAATTCAGTGAATGGAAGAATAAAAGAAGAGAACCGTCTTATGTCTGAGGATGAAAGTGTTGTATCATCCGAGTTAAATTATCCATTTGTAGGCAATGCAACGTATCTAGATGACATTGATGAGAAAAAGATTGAAGTTGGTGATTTGCAGCTCTTGTCTACCAGAGTAAAATTGGAGATGGATTGGGATGAACAAGGAGCAATGTCTCATACTGTTATTAGTAGTTTTACTAACTATCAAAAAGAGCAAGAAAAGCATGAAGTCACGAAAGAAAATAGAGAACAAAAATTCACAATTCCGTCTCAAAATAAAAAAGCTGTAATCTGTTTGAAAGCACTAATTAAATCAGAGCTTAAGAATGATGCCTGTGGTGAAGGCATGAAAGATGTCTTGGATATCAAGGAGGAGAGCGTAGAAAAATTAGGAGATTTAGTAATGAAAGAGAAAAATCTGCAAACAAGCTCAGACCGTCCTGTAACATTGAAAAAGTTGCAGACTTCAAAAAATCTACTGATGACTTCGCCTAAGGAGAAACCCAACACCTCTTCACGCATTTCAGGAGAGTTTGATTCAAATGATGCACAAGACAACCAATCTAAGATCAGTTCTCAGCCAAAGAACCATGTATTTGCAAATTGTGATAAAGAAATTTCTTGCAATAGCAAACTGCAAATGCTGATTAGGACTCATACTAGGGAAAAACCCTTTGAATGTGCACATTGCAGCTCTAAATTCTCGCACAAAGGCAGTCTGATACAACACATCAGGACGCATACTGGGGAAAAACCTTTTAAGTGTACTCAGTGCAGTGCTAAATTTTCACAGAAAGGCAGGCTGATAGAACACATCAGGACACATACTGGGGAGAGACCCTTTGAATGCATACATTGCAGTGCTAAATTCTCGCTAAAAGGCAATCTGACACGACACATGAGTACGCATACTGGGGAAAAACCTTTTAAATGTTCTCATTGTAGTGCTAAATTTTCTGAGAAAGGCAGTTTGAAGCGACACATCAGGACGCATACTAGGGAAAAATCCTTTGAATGCGCACATTGCAGTGCTAAATTCTCGCACAAAGGCAGTCTGATACCACACATCAGGACACATACTGGGGAAAGACCTTTTAAGTGTACTGAGTGCAGTGCTAAATTTTTTCAGAAAGACAGTATGGAACAACACATGAGGACACATATTAGGGAAAAATCCTTTGAATGCGCACATTGCAGTGCTAAATTCTCGCACAAAGGCAGTCTGATACGACACATCAGGACACATATTGGGGAAAGACCTTTTAAGTGTACTCAGTGCAGTGTTAAATTTTTGTATAGAAGTAATCTGATAATACACATGAGGACGCATACTGGGGAAAAACCTTTTAAGTGTACTGAGTGCAGTGCTAAATTTTTTCAGAAAGACAGTATGGAACAACACATGAGGACACATATTAGGGAAAAATCCTTTGAATGCGCACATTGCAGTGCTAAATTCTCGCACAAAGGCAGTCTGATACGACACATCAGGACACATATTGGGGAAAGACCTTTTAAGTGTACTCAGTGCAGTGTTAAATTTTTGTATAGAAGTAATCTGATAATACACATGAGGACGCATACTGGGGAAAAACCTTTTAAGTGTACTCAGTGTAGTGCTAAATTTTCACAGAAAGGCCAGCTGATACAACACATCAGGACACATACTGGGGAAAGACCCTTTGAATGCATACATTGCAGTGCTAAATTTTCTCAGAAAGGCAGTATGAAACAACACATCTGGACGCATACTAGGGAAAAACCTTTTAAGTGTACTCAGTGCATTGCTAAGTTTTTGGATAAAAGTAATCTGAAAAAGCACATTAAGACTCATACTGAGGAAAAACCCTTTGAATGCGCACATTGCAGTGTTAAATTTATGTCGAAATGCAGGCTGATACTACACATTAGGACGCATTCTGGGGAAAAACCTTTTAAATGTACTCAGTGCAGTGCTAAATTTTCTCAGAAAGGCAGTATGAAACGACACATCAGGACGCATACTAGGGAAAAACCTTTTAAGTGTACTCAGTGCTGTGCTAAATTTTTGCAGAAAGACAGGATGGAACAACACATCAGGATGCATTCTGGGGAAAAATCCTTTGAATGA
- Protein Sequence
- MFGRGSKHPTQPSTKIGSQKYVTFNSGDAGNNRTIMMKEEKVEAWFGKQLRIILERVDKVKEEKASKEGRPQSGSHLNDTFASGKGEHENQAVPAGFSCHDNSVNGRIKEENRLMSEDESVVSSELNYPFVGNATYLDDIDEKKIEVGDLQLLSTRVKLEMDWDEQGAMSHTVISSFTNYQKEQEKHEVTKENREQKFTIPSQNKKAVICLKALIKSELKNDACGEGMKDVLDIKEESVEKLGDLVMKEKNLQTSSDRPVTLKKLQTSKNLLMTSPKEKPNTSSRISGEFDSNDAQDNQSKISSQPKNHVFANCDKEISCNSKLQMLIRTHTREKPFECAHCSSKFSHKGSLIQHIRTHTGEKPFKCTQCSAKFSQKGRLIEHIRTHTGERPFECIHCSAKFSLKGNLTRHMSTHTGEKPFKCSHCSAKFSEKGSLKRHIRTHTREKSFECAHCSAKFSHKGSLIPHIRTHTGERPFKCTECSAKFFQKDSMEQHMRTHIREKSFECAHCSAKFSHKGSLIRHIRTHIGERPFKCTQCSVKFLYRSNLIIHMRTHTGEKPFKCTECSAKFFQKDSMEQHMRTHIREKSFECAHCSAKFSHKGSLIRHIRTHIGERPFKCTQCSVKFLYRSNLIIHMRTHTGEKPFKCTQCSAKFSQKGQLIQHIRTHTGERPFECIHCSAKFSQKGSMKQHIWTHTREKPFKCTQCIAKFLDKSNLKKHIKTHTEEKPFECAHCSVKFMSKCRLILHIRTHSGEKPFKCTQCSAKFSQKGSMKRHIRTHTREKPFKCTQCCAKFLQKDRMEQHIRMHSGEKSFE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -