Basic Information

Insect: Trialeurodes vaporariorum
Gene Symbol: -
Assembly: GCA_011764245.1
Location: HIC:19724299-19727241[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 7.7 5.2e+02 1.5 2.7 13 23 377 387 372 387 0.89

2 21 0.00011 0.0073 16.7 0.9 1 23 394 416 394 416 0.96

3 21 0.00039 0.027 15.0 2.4 1 23 422 444 422 444 0.98

4 21 0.012 0.78 10.3 1.6 1 23 451 473 451 473 0.97

5 21 5.8e-05 0.004 17.6 1.2 1 23 479 501 479 501 0.98

6 21 0.0028 0.19 12.3 2.6 2 23 508 529 507 529 0.96

7 21 0.00039 0.027 15.0 0.4 1 23 535 557 535 557 0.95

8 21 0.032 2.1 9.0 2.5 1 23 563 585 563 585 0.95

9 21 0.0085 0.57 10.8 0.9 1 23 591 613 591 613 0.98

10 21 0.00051 0.034 14.6 1.6 1 23 618 640 618 640 0.97

11 21 7.5e-05 0.0051 17.2 0.2 1 23 646 668 646 668 0.97

12 21 0.00038 0.026 15.0 1.8 1 23 674 696 674 696 0.97

13 21 0.00023 0.016 15.7 4.9 1 23 703 725 703 725 0.98

14 21 2.2e-05 0.0015 18.9 2.4 1 23 731 753 731 753 0.97

15 21 2.2e-05 0.0015 18.9 0.8 1 23 759 781 759 781 0.98

16 21 0.0086 0.59 10.7 1.1 1 23 787 809 787 809 0.98

17 21 4.4e-05 0.003 18.0 0.3 1 23 815 837 815 837 0.98

18 21 1.8 1.2e+02 3.4 0.5 1 23 843 865 843 865 0.94

19 21 0.14 9.5 6.9 2.5 1 23 871 894 871 894 0.87

20 21 7.4e-06 0.0005 20.4 0.4 1 23 899 921 899 921 0.98

21 21 1.4e-05 0.00094 19.5 0.5 1 23 924 946 924 946 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	7.7	5.2e+02	1.5	2.7	13	23	377	387	372	387	0.89
2	21	0.00011	0.0073	16.7	0.9	1	23	394	416	394	416	0.96
3	21	0.00039	0.027	15.0	2.4	1	23	422	444	422	444	0.98
4	21	0.012	0.78	10.3	1.6	1	23	451	473	451	473	0.97
5	21	5.8e-05	0.004	17.6	1.2	1	23	479	501	479	501	0.98
6	21	0.0028	0.19	12.3	2.6	2	23	508	529	507	529	0.96
7	21	0.00039	0.027	15.0	0.4	1	23	535	557	535	557	0.95
8	21	0.032	2.1	9.0	2.5	1	23	563	585	563	585	0.95
9	21	0.0085	0.57	10.8	0.9	1	23	591	613	591	613	0.98
10	21	0.00051	0.034	14.6	1.6	1	23	618	640	618	640	0.97
11	21	7.5e-05	0.0051	17.2	0.2	1	23	646	668	646	668	0.97
12	21	0.00038	0.026	15.0	1.8	1	23	674	696	674	696	0.97
13	21	0.00023	0.016	15.7	4.9	1	23	703	725	703	725	0.98
14	21	2.2e-05	0.0015	18.9	2.4	1	23	731	753	731	753	0.97
15	21	2.2e-05	0.0015	18.9	0.8	1	23	759	781	759	781	0.98
16	21	0.0086	0.59	10.7	1.1	1	23	787	809	787	809	0.98
17	21	4.4e-05	0.003	18.0	0.3	1	23	815	837	815	837	0.98
18	21	1.8	1.2e+02	3.4	0.5	1	23	843	865	843	865	0.94
19	21	0.14	9.5	6.9	2.5	1	23	871	894	871	894	0.87
20	21	7.4e-06	0.0005	20.4	0.4	1	23	899	921	899	921	0.98
21	21	1.4e-05	0.00094	19.5	0.5	1	23	924	946	924	946	0.98

Sequence Information

Coding Sequence: ATGAATATCAAATCGGTAATTGTTCCGGAAGCAAAAAATACCGACCACGAAATGACTTTGGTCGCTGAATCCAAGGCCCTTTCTCATTCGGAAGACAAGAATACCACACCGGAGCAAACAATTGTTTGCGTAGAAAAGAGTAATGTAAACAGAACTTTCAATACGACCAAAGAAAACGCGGAGACATGGCTAGGAAGAAGACTGAAAATTGTTCTTAAAAGAGTGGACGAGATACTCGGAAAAAACTTGAAAGAAGAGAGAAGAACGCAACCAGCGACTCAGAATGACATTGCCTTAACAACTGCTTTGAACTGTGTGAACGACATCATATTAGGTAGGACAATAAAAGTAGAAAATGATTTTTTGTGGGAAGAGGAGCCAGGAGTAATATCTGGATCTCGATTCGAGACCACAGCTGATGTAACTGACTCACGGAATACTGAAGTTGAAGAAGGGCTGGAATTTAAAGATTTTCAGCACTCGCCTGTAATCGTGAAACAAGAAAGATACTGGGATGAAGGTAGCGTAAATGTTGAGTCAGTCAATGTTGACTCAGCCAATGCTGACTCTGAAAGGCTGCATAGAGAGCAACTGAATCATAAATGCCTCAATATAGATGGAAACGGACTAAGTGTCACATCAACATCCTGCCAAGAGAAAACCAGCGACTCGATGCTTGAACTGATCAAATTGGAGACCATTCTCTTGAATGAGGTTGATCTCGAAGATGAGCCTGAATTCAAGCAAAAAATTATCCTCAATGAATCGAACATGGTTGTAGCGAAAGAAGTTTTAGAATGTAGGAATACGCTTGGTTTATCGGTACGCAAGGAAGAAGAAAGCAAAATGATGGAGGAAAGCATAAATTTTGAATGCGCCAATCTGCATGTCGAAAGTATCTCTAAACTTGAAGGATACAGTGCAAATCACGATCTGTTATCCTCAATCGAAGTCGTGCCTAAAAGTGAATTTGAATCTCCCGCGAGAGACTCGAATATCAAATTGGAACATACACAATTGCACGAGAATATCTATTGTCAACAGGATTTGAAATGTAAAGACCCTCTGACAAATTGTTTGTCACCTCAGGTTGATGAGAGTCTTGCGGCAAGTAGACGGAGCAACTTAAAGCATTCTTTAACAAAGCATCTGAAGACTCATTCTGAAACAGCAGGTGTGTTCTCCTGTCCACAGTGTCCGACAACATTCTCTTCAAAAGGTACGGCAAAACGTCATTTGTTGTTTCATTCTGAGGAGCACGTGTTTTCCTGTTCACAGTGTCCAGCAAATTACAACTCAAAGCACGCTTTATCAAAGCATTTGAAGACTCATTCTGAGACGGAAGGTGTGTTCTCCTGTTCACATTGTCCGGCTAAGTTTTTTGCCAAAGGTTCTGTAAGAAGACATTTAGCTAAACATTCAGGGGAGGGACTATTCACATGTTCAAAATGTGAAGCAAAGTTTTCTTCTCAAAATAAGCTACAGAAGCATTTAGCGATTCATTACAGCGAGAGACCGCTTTCCTGCGAACGATGTCCGGCCAAGTTCTTTAAAAAAAGTTGTTTAATTAGGCATTTGAAGATTCATTCTGGGGAACGACCTTTTCTTTGCACACTTTGTCCTGCAAAGTTCGCTTACAAAGATAAATTAAACGACCATCTGATGACTCATTCGAGGAAGCGGCAATTTTCCTGTTCTTTTTGTTCATTCAAGGTATTCACTAGTAGCCGGTTGAAGATTCATTTGATGACACATACTGGAGAAAGACCATTCTCTTGTACACGTTGTCCAGCAAAATTCCTTATTAACAGTGAGTTAAACAAACATTTGAAGACTCACGGAGAGAGATTATTTTCCTGCTCAAAGTGTCCTTCAAAGTTCTTTTTCAAAAGTGCCTTGAATAAGCACATGGTGATCCATTCTAAAGAGAGACCATTTTCCTGCGAGCAGTGTCCGGCAACATTTCAGACAAAGGGTAACTTAAAGAGTCATGTGGCTGTTCATTCAGGGAAGAGACCATTTTCCTGTGCGCATTGTGCGGCAACGTTCACCACAAAAGGTTCATTAAAGGATCATATATTTAAACACTTAAGAAACTATGGGCCGTATTCTTGTGAGCACTGTCCTAAGAAGTTCGCAAAGAAACATCTCGTAAAAATTCATATGTCGAAACACACAGGTGAATCGCCTTTTGCATGTGTCCATTGCAAGAAAATAAGTTCTAGTAGCTCCGCTTTAAAGAAACATTTAAGAACACACACTGGCGAAAAACCTTACATCTGCGCTCACTGCCCAAAAAGGTATTCGCAGGGCAATAATCTAATTATACATATGAGGCAGCATACCGGTGAGAAACCTTATTCCTGTGTTCACTGCCCCGCAAAATTTACAGCAAAAAGTATCCTCGACTCACACATGAAAACCCATACCGGTGAGAAACCATTCTCATGCGTTGAATGTGGATCAAAGTTCCGATCGAACCGAGGACTAAGAGCTCACATGATATCTCACAGTGATGAAAAACCGTACGCTTGTTCTCAGTGTCCCTCGAAATTTGCATGCAGAAGTTCTTTGATTCCGCACGCGAGGATACATGCTCAAGAGAAACCTTTCGCGTGTCCTCATTGCCCGCAAAAATTTGCACAGAGAATAAATTGTGATACGCATATTGTAAAATATCATGATGACAAGCCCTTCACTTGTAATCTCTGCCCCGCAAAATTTAGCAATAGAGGTACTCTAAAAAATCATATCGCTACGCATGCTGGTTTCACTTGCGCTCAGTGCCCTTTAAAATTTAAATCAAATGTTTCGCTTATCAAGCATCTTCGAGTGCATAAAGGAGATAAACTCTTAGAATCCAATCTCTGCTCCGCTAAAATTAAAGGGAGACGCAATTTGAATAAACAGGCAAAGATACATACTTACAATAACAAAAGCTAA
Protein Sequence: MNIKSVIVPEAKNTDHEMTLVAESKALSHSEDKNTTPEQTIVCVEKSNVNRTFNTTKENAETWLGRRLKIVLKRVDEILGKNLKEERRTQPATQNDIALTTALNCVNDIILGRTIKVENDFLWEEEPGVISGSRFETTADVTDSRNTEVEEGLEFKDFQHSPVIVKQERYWDEGSVNVESVNVDSANADSERLHREQLNHKCLNIDGNGLSVTSTSCQEKTSDSMLELIKLETILLNEVDLEDEPEFKQKIILNESNMVVAKEVLECRNTLGLSVRKEEESKMMEESINFECANLHVESISKLEGYSANHDLLSSIEVVPKSEFESPARDSNIKLEHTQLHENIYCQQDLKCKDPLTNCLSPQVDESLAASRRSNLKHSLTKHLKTHSETAGVFSCPQCPTTFSSKGTAKRHLLFHSEEHVFSCSQCPANYNSKHALSKHLKTHSETEGVFSCSHCPAKFFAKGSVRRHLAKHSGEGLFTCSKCEAKFSSQNKLQKHLAIHYSERPLSCERCPAKFFKKSCLIRHLKIHSGERPFLCTLCPAKFAYKDKLNDHLMTHSRKRQFSCSFCSFKVFTSSRLKIHLMTHTGERPFSCTRCPAKFLINSELNKHLKTHGERLFSCSKCPSKFFFKSALNKHMVIHSKERPFSCEQCPATFQTKGNLKSHVAVHSGKRPFSCAHCAATFTTKGSLKDHIFKHLRNYGPYSCEHCPKKFAKKHLVKIHMSKHTGESPFACVHCKKISSSSSALKKHLRTHTGEKPYICAHCPKRYSQGNNLIIHMRQHTGEKPYSCVHCPAKFTAKSILDSHMKTHTGEKPFSCVECGSKFRSNRGLRAHMISHSDEKPYACSQCPSKFACRSSLIPHARIHAQEKPFACPHCPQKFAQRINCDTHIVKYHDDKPFTCNLCPAKFSNRGTLKNHIATHAGFTCAQCPLKFKSNVSLIKHLRVHKGDKLLESNLCSAKIKGRRNLNKQAKIHTYNNKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -