Tvap016799.1
Basic Information
- Insect
- Trialeurodes vaporariorum
- Gene Symbol
- -
- Assembly
- GCA_011764245.1
- Location
- HIC:49190338-49192518[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.72 49 4.7 1.0 1 23 187 209 187 209 0.96 2 17 0.011 0.76 10.4 1.9 1 23 243 265 243 265 0.98 3 17 8.4e-05 0.0057 17.1 0.5 2 20 272 290 271 292 0.93 4 17 4.9e-07 3.3e-05 24.1 3.6 1 23 299 321 299 321 0.99 5 17 9.4e-06 0.00063 20.1 2.4 1 23 327 349 327 349 0.98 6 17 9.4e-05 0.0064 16.9 5.6 1 23 355 377 355 377 0.98 7 17 5.4e-07 3.7e-05 24.0 2.3 1 23 383 405 383 405 0.99 8 17 2.3e-07 1.6e-05 25.1 1.4 1 23 411 433 411 433 0.99 9 17 1.6e-05 0.0011 19.3 2.9 1 23 439 461 439 461 0.99 10 17 9.7e-06 0.00066 20.0 5.4 1 23 467 489 467 489 0.99 11 17 9.1e-06 0.00062 20.1 2.7 1 23 495 517 495 517 0.99 12 17 0.00085 0.058 13.9 5.2 1 23 523 545 523 545 0.98 13 17 5.9e-07 4e-05 23.9 3.0 1 23 551 573 551 573 0.99 14 17 1e-05 0.00069 20.0 2.7 1 23 579 601 579 601 0.99 15 17 6.7e-05 0.0045 17.4 4.5 1 23 635 657 635 657 0.99 16 17 1.8e-05 0.0012 19.2 1.6 1 23 663 685 663 685 0.98 17 17 0.077 5.2 7.8 3.0 8 23 698 713 691 713 0.88
Sequence Information
- Coding Sequence
- ATGAAGGAGGGAACAAAAAATATTACCAGACGGATTTTCAGTTCTGAGTCCCCGAGTCATTCAACCAAAGACAGTGGACCAAAATTCGTAACCTTTAATTCAGGGAAAACAGGCAAGGACCAGACTGTAACCTTGAATGAAGAAGAAGTCGAAGCCTGGTTTGGAAAGAGACTAAAAATCATTTTGAAGAGAGTGGCAAAGGTGAAAGAGGAAGTCGCAGAGGAAAAATGGAGGCAGCAGTTTGAATATAATCAAGATGAACTTTACGGGCACAGCAGTCATAATATTGAAACTGCAGCAGGAACTTCGGAGTTTCAGTGTGATAGTAAATATTTGTTTGATACAATTAAAACTGAGAATAATCTCAGCTGTGCAGAGGATTTTGGGGATATGTGTGATCTTGAATGTGAAAATGAGGATAGCTTGTCTAATTTGAAAGAGGTTGATGTCAAGGATTTTGATGTCAGTGAAACTCAGTTCTTATCTGGAAGTCCAGCCCAATTTGTTTTAAAGGAAGAGGTAAACAAGAAATTGAAGAGCTGTGTTCATCAAGAACTTTATACTTGTGCCCTTTGCACAGTAGAATTGTCCTGTAAAATCCTTTTGACCGAACACATTAGAAAACACACTGTAAGCAATCAGCCTAGACGAAGCCACCTCTATGAAAATTTTTCACAGGAAATCAACCTTAAAAAACAAATCAGAACACTCACTAGTGACAAATCATTTGAATGCACTCACTGCATAGCAAAATTTACTGAAAAGAGCATTCTGAATAATCACATCAGAACACATACTGGTGAAAAACCATTAGAATGCACTCACTGCAATACAAAATTTGCTCGAAAGAGCGGTCTGAAGCTTCACATCGGAACACGTACCAGTGAAAAACCATTTGAATGCACTCACTGCAATGCAAAGTTTTCTCAAAAGAGCACTCTGAAGATTCACATCAGAACACATACTGGTGAAAAACCATTTGAATGCACTTACTGCAATGCAAAGTTTTCTCAAAAAGGCCACATGATCGAGCATATCAGAAAACATACTGGTGAAAAACCATTCATATGCAGTCACTGTAATGCAAAATTTGCTCAGAAAAGGCATATGAAAAGTCACATCAGAACACACACTGGTGAAAAACCATTCGAATGCACTCACTGCAATGCAAAATTTGCTCAAAAGAGCGCTCTGAAGAGTCACATCAGAACACATACTGGTGAAAAACCATTTGAATGCACTCACTGCAATGCAAACTTTGCTCAAAAGAGCGCTCTGGAGCGTCACATCAGAACACATACCAGTGAAAAACGATTTAAATGTACTCACTGCAATGCAAAATTTGCTGAAAAGAGCGTTCTGAAGAATCACATCAGAACACATACTGGTGAAAAACCATTTGAATGCAGTCACTGTAATGCAAAATTTGCTCAGAAAAGCCATATGAAAAGTCACATCAGAACACATACTGGTGAAAAACCATTTAAATGTACTCACTGCAGCGCAAAATTTGCTCGAAAGAGCGTTCTAGAGAGTCACATCAGAACACATACTGGTGAAAAACCATTTGAATGCAGTCACTGTAATGCAAAATTTGCTCAGAAAAGATATATGAAAAGTCACTTCAGAACACACATTGGTGAAAAACCATTCGAATGCACTCACTGCAATACAAAGTTTTCTCAGAAGATCAATCTGGAGGAGCACATCAGAACACACACCGGTGAAAAACCATTTGAATGCACTCACTGCAGCGCAAAATTTGCTCGAAAGAGCGTTTTAAAGAGTCACATCAGAACACATACTGGTGAAAAACCATTTAAATGTATCCACTGCAGCGCAAAATTTGCTGGAAAGAGCGTTCTAAAGATTCTTATCAGAACACATACCGCTGAAAAACCATTTAAATGTACTCACTGCATAGCAAAATTTTCTGTAAAGAGCAATCTGAAGAAGCACATCAGAAAACATACTGGAAAAAAACCATTTGAATGCGCTTACTGCAATGCAAAGTTTTCTCAAAAAGGCCACATGATCGAGCATATCAGAAAACATACTGATGAAAAACCATTCGAATGCAGTCACTATAATGCAAAATTTGCTCAGAAAAGCCATATGAAAAGTCACATCAGAACACACACTGGTGAAAAACCATTCGAATGCACTCACTGCAATACATAG
- Protein Sequence
- MKEGTKNITRRIFSSESPSHSTKDSGPKFVTFNSGKTGKDQTVTLNEEEVEAWFGKRLKIILKRVAKVKEEVAEEKWRQQFEYNQDELYGHSSHNIETAAGTSEFQCDSKYLFDTIKTENNLSCAEDFGDMCDLECENEDSLSNLKEVDVKDFDVSETQFLSGSPAQFVLKEEVNKKLKSCVHQELYTCALCTVELSCKILLTEHIRKHTVSNQPRRSHLYENFSQEINLKKQIRTLTSDKSFECTHCIAKFTEKSILNNHIRTHTGEKPLECTHCNTKFARKSGLKLHIGTRTSEKPFECTHCNAKFSQKSTLKIHIRTHTGEKPFECTYCNAKFSQKGHMIEHIRKHTGEKPFICSHCNAKFAQKRHMKSHIRTHTGEKPFECTHCNAKFAQKSALKSHIRTHTGEKPFECTHCNANFAQKSALERHIRTHTSEKRFKCTHCNAKFAEKSVLKNHIRTHTGEKPFECSHCNAKFAQKSHMKSHIRTHTGEKPFKCTHCSAKFARKSVLESHIRTHTGEKPFECSHCNAKFAQKRYMKSHFRTHIGEKPFECTHCNTKFSQKINLEEHIRTHTGEKPFECTHCSAKFARKSVLKSHIRTHTGEKPFKCIHCSAKFAGKSVLKILIRTHTAEKPFKCTHCIAKFSVKSNLKKHIRKHTGKKPFECAYCNAKFSQKGHMIEHIRKHTDEKPFECSHYNAKFAQKSHMKSHIRTHTGEKPFECTHCNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -