Tvap004449.1
Basic Information
- Insect
- Trialeurodes vaporariorum
- Gene Symbol
- -
- Assembly
- GCA_011764245.1
- Location
- HIC:7273067-7275757[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.005 0.34 11.5 0.4 1 23 24 46 24 46 0.98 2 21 4e-05 0.0027 18.1 7.5 1 23 52 74 52 74 0.97 3 21 6.5e-06 0.00044 20.6 1.2 1 23 80 103 80 103 0.94 4 21 0.00045 0.03 14.8 0.2 1 23 123 145 123 145 0.98 5 21 1.3e-05 0.00089 19.6 9.2 1 23 151 173 151 173 0.98 6 21 7.8e-06 0.00053 20.3 0.4 1 23 179 201 179 201 0.98 7 21 0.0013 0.088 13.3 0.8 1 18 207 224 207 224 0.94 8 21 0.78 53 4.6 0.2 4 23 223 242 223 242 0.95 9 21 1.4e-06 9.3e-05 22.7 3.2 1 23 248 270 248 270 0.97 10 21 3.2e-05 0.0021 18.4 2.9 1 23 276 298 276 298 0.98 11 21 0.011 0.74 10.4 0.4 2 17 305 320 304 321 0.92 12 21 7.9e-05 0.0054 17.2 0.7 1 23 346 368 346 368 0.98 13 21 0.0077 0.52 10.9 1.9 1 18 374 391 374 396 0.87 14 21 1.4e-06 9.3e-05 22.7 3.2 1 23 402 424 402 424 0.97 15 21 0.00012 0.0081 16.6 0.3 1 21 430 450 430 451 0.95 16 21 0.0015 0.1 13.1 1.7 1 23 458 480 458 480 0.98 17 21 7.9e-05 0.0053 17.2 1.0 1 23 500 522 500 522 0.98 18 21 8.8e-07 5.9e-05 23.3 3.8 1 23 528 550 528 550 0.98 19 21 0.0092 0.62 10.7 0.1 1 23 556 580 556 580 0.98 20 21 4.5 3.1e+02 2.2 0.7 14 23 599 608 599 608 0.93 21 21 0.35 24 5.7 2.3 1 17 614 630 614 631 0.90
Sequence Information
- Coding Sequence
- ATGCTGAACACTAGCTTTGACAATCCTTTGATGCAAAGTCATGTATTAACTCATTCTGAAGAGGGACTATTTTCCTGTGCAGACTGTCCAGCCAAATTTTTTTCAGATTTTGCCTTAAACGATCATTTGAAGAAACATGTGAATGAAAAACAGCATAATTGTTCCTACTGCCATAAAAACTTCGGTAAAAGATCTCATCTAATAAGACATATCAGGATACATACTGGTGAAAAACCATTTGACTGCACTTATTGCAATGTAAAATTTTCTCGCAGCGATGATTTGAAACGTCACTACACAATAATACACAGCTCCGACAATCCTATGACACAAAGTCACTTATTAGCTCACTCTGAAGAGGGACTATTTTCCTGCGCAGACTGTCCAGCCAAATTTAATTCAGATTATGCCTTAAACGAACATTTGAAGAAACATGTCAATGAAAAACAGTATAATTGTTCCTACTGCCATAAAAACTTCTGTAAAAGATCTCATCTAATAAGACATATCAGGATACATACTGGTGAAAAACCATTTGAATGCACTTATTGCAATGTAAAATTTTCCGACAGTGCTGTTTTGATGCGTCACATTAGGTTACATACCGGTGAAAAACCTTTTGAATGCACTCATTGCAATGTAAAATTCACTCGCAGAGCTAATTTGAAACACTGTCCGGCCAAATTTAATTCAGATTATGCCTTATACGAACATTCGAAGAAACATGTCAATGAAAAACAGCATAATTGTTCCTACTGCAATAAAAACTTCAATGGAAGAAGTAATCTAATGAGACATATCAGGATACATACTGGTGAAAAACCGTTTAAATGCAATCATTGCAATTTAAAATTTTCCGACAGTGCAGTTTTGATGCGTCACACTAGGTTACATACAGGTGAAAAACCTATTGAATGCACTCATTGCAATGTAAAATTTACTCGCAGAGATACTTTGAAACAACTCTTGAGAATACACAGCTCCGACAATCCTATGACGCAAAGTCACATACTAGCTCACTCTGAAGAGAGACAATTTTCCTGTACAGACTGTCCAGCCAAATTTAATTCTGATTATGCATTAAACAATCATTTGAAGAAACATGTCGCTGAAAAACAGCATAATTGTTCCTACTGCCATAAAAGCTTCAATGTAAGAAGAAATCTATTGAGAGATATTAGGACACATACTGTTGAAAAACAGCATAATTGTTCCTACTGCAATAAAAACTTCAATGGAAGAAGTAATCTAATGAGACATATCAGGATACATACTGGTGAAAAACCATTTGAATGCGCTTATTGCCGTGTAAAATTTTCTGACAGTGGAACTTTGAAGAAACACATCATGTCACGTACTGGTGAAAAACCATTTGAATGCACTTATTGCAATTTAAAATTTCCTCGCATAGATGCTTTGAAATGTCACTTGAGAATACACAGCTCCGACAATCCTATGACGCAAAGTCATGTTTTAGCTCACTCTGAAGAGGAACAATTTTCTTGTGCCGACTGTCCAGCCAAATTTAATTCAAATCATGCCTTAAACGATCATTTGAAGAAACATGTTAATGAAAAACGATATAACTGTGTCTACTGCAATAAAAACTTCATTCATAGAAGTAATCTAATGAGACATGTCAGGACACATACAAGTGAAAAACTGTATACATGCGATCCCGATCATTGCAATGTAAACTTTGCTGAAATTGGTGGTTTGAAGGATCACATCAGGGAACATTACCGGTGAAAACCCATTTGAATGCTTTCATTGCAAATCAAAATTTTCTTATAATATAATTTGAATAATCATTTGAGGATACATTTAGGCGAGACACCTTTTGAATGCACCTATTGCCATGCAAAATTCCACTTTAAGAGTAATGTAAACAAGCTTGCTTGCCTCTTTTGTGCAGCTAATTTGTCCTGCCAATCGACTCTGAATAAATGTAAACAAAAATATTGTATGGTAAAATCCTTTCTTCTGTTCTTTGACCCATCTGCAATGTAGGCTACTTCTCAAAGTATTTTTAATGATCAATTTACTTCGATCTACGGATAAAATTTTCGGAGTGAATTTTTAATTTTTATTTAATTCTTTTTAAATTGATCGACCAATGCTCAAGACTGAGAAGGGGAT
- Protein Sequence
- MLNTSFDNPLMQSHVLTHSEEGLFSCADCPAKFFSDFALNDHLKKHVNEKQHNCSYCHKNFGKRSHLIRHIRIHTGEKPFDCTYCNVKFSRSDDLKRHYTIIHSSDNPMTQSHLLAHSEEGLFSCADCPAKFNSDYALNEHLKKHVNEKQYNCSYCHKNFCKRSHLIRHIRIHTGEKPFECTYCNVKFSDSAVLMRHIRLHTGEKPFECTHCNVKFTRRANLKHCPAKFNSDYALYEHSKKHVNEKQHNCSYCNKNFNGRSNLMRHIRIHTGEKPFKCNHCNLKFSDSAVLMRHTRLHTGEKPIECTHCNVKFTRRDTLKQLLRIHSSDNPMTQSHILAHSEERQFSCTDCPAKFNSDYALNNHLKKHVAEKQHNCSYCHKSFNVRRNLLRDIRTHTVEKQHNCSYCNKNFNGRSNLMRHIRIHTGEKPFECAYCRVKFSDSGTLKKHIMSRTGEKPFECTYCNLKFPRIDALKCHLRIHSSDNPMTQSHVLAHSEEEQFSCADCPAKFNSNHALNDHLKKHVNEKRYNCVYCNKNFIHRSNLMRHVRTHTSEKLYTCDPDHCNVNFAEIGGLKDHIREHYR*KPI*MLSLQIKIFL*YNLNNHLRIHLGETPFECTYCHAKFHFKSNVNKLACLFCAANLSCQSTLNKCKQKYCMVKSFLLFFDPSAM*ATSQSIFNDQFTSIYG*NFRSEFLIFI*FFLN*STNAQD*EGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -