Tvap015454.1
Basic Information
- Insect
- Trialeurodes vaporariorum
- Gene Symbol
- -
- Assembly
- GCA_011764245.1
- Location
- HIC:37823442-37828955[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 39 0.0005 0.034 14.6 0.6 1 23 263 285 263 285 0.97 2 39 0.00018 0.012 16.0 4.5 1 23 290 312 290 312 0.97 3 39 0.0016 0.11 13.0 1.0 1 23 325 347 325 347 0.97 4 39 0.02 1.4 9.6 2.8 1 23 353 375 353 375 0.98 5 39 0.05 3.4 8.3 4.0 1 23 442 464 442 464 0.95 6 39 4.2e-05 0.0028 18.0 1.1 1 23 476 498 476 498 0.97 7 39 4.6e-05 0.0031 17.9 1.2 1 23 504 526 504 526 0.99 8 39 3.9e-05 0.0027 18.1 1.7 1 23 576 598 576 598 0.98 9 39 0.0089 0.6 10.7 0.9 1 23 608 630 608 630 0.98 10 39 0.00013 0.009 16.4 2.2 1 23 636 658 636 658 0.99 11 39 0.00014 0.0098 16.3 2.2 1 23 706 728 706 728 0.98 12 39 0.00031 0.021 15.3 0.8 3 23 736 756 734 756 0.96 13 39 0.0031 0.21 12.1 1.5 1 23 764 786 764 786 0.96 14 39 0.00018 0.012 16.0 1.5 1 23 852 874 852 874 0.98 15 39 0.02 1.3 9.6 0.5 1 23 911 933 911 933 0.96 16 39 0.89 60 4.4 0.7 1 23 939 961 939 961 0.96 17 39 0.00011 0.0077 16.7 0.3 1 23 999 1021 999 1021 0.98 18 39 0.00018 0.012 16.0 1.8 1 23 1024 1046 1024 1046 0.98 19 39 0.18 12 6.6 1.0 1 23 1056 1078 1056 1078 0.98 20 39 0.053 3.6 8.3 4.1 1 21 1084 1104 1084 1106 0.96 21 39 0.0014 0.097 13.2 0.4 1 23 1144 1166 1144 1166 0.98 22 39 0.00029 0.019 15.4 1.0 1 23 1172 1194 1172 1194 0.96 23 39 0.00042 0.028 14.9 2.4 1 23 1203 1225 1203 1225 0.98 24 39 0.0097 0.66 10.6 1.5 1 23 1231 1253 1231 1253 0.98 25 39 0.021 1.4 9.6 3.3 1 23 1302 1324 1302 1324 0.98 26 39 0.67 45 4.8 4.5 1 23 1330 1352 1330 1352 0.93 27 39 0.08 5.4 7.7 1.8 1 20 1361 1380 1361 1383 0.93 28 39 0.0007 0.048 14.2 5.5 1 23 1389 1411 1389 1411 0.99 29 39 0.0025 0.17 12.4 1.2 1 23 1460 1482 1460 1482 0.98 30 39 6.7 4.5e+02 1.7 10.0 1 21 1488 1508 1488 1510 0.95 31 39 0.00081 0.055 14.0 0.8 1 23 1520 1542 1520 1542 0.94 32 39 0.11 7.7 7.2 5.6 1 23 1548 1571 1548 1571 0.96 33 39 1.2 80 4.0 2.6 1 23 1601 1624 1601 1624 0.93 34 39 0.00041 0.028 14.9 0.7 1 23 1630 1652 1630 1652 0.98 35 39 0.26 18 6.1 1.0 2 23 1657 1679 1656 1679 0.96 36 39 0.00011 0.0075 16.7 8.8 1 23 1705 1728 1705 1728 0.97 37 39 0.54 36 5.1 1.0 2 23 1748 1769 1747 1769 0.94 38 39 0.0018 0.12 12.9 1.7 1 23 1777 1799 1777 1799 0.98 39 39 0.00044 0.03 14.8 1.0 1 23 1806 1828 1806 1828 0.98
Sequence Information
- Coding Sequence
- ATGACCATCTTCAAAAAATACCCCCGAGTAGTTTTGGAACGATGTGACCTGAACAAGCTCAGGGCAGAATTGGGGATCGAGATTGGCGAAGCTACATCAGCTATAGTTGAAGGCAAAGGAGTGAGTAGAACAAATTCTTGTAGTCATGAGGAATATCAGTCAAGGAGTGACCAAGGTCAAGCCACCTTACAGTCAAGCGATGTTTCCTGTTCTCTGATGGTTAATGAACGGGTAAATAATTGTGATTCGCTTTCGGTTGAAAGACAAGATACGGACGATACATCTCAAAACTTGAACCATTTGTTCAGGCAGCAGCTGAACCATGGATCAAATTCTGATCGTGAACTTGATGAAAATGCTTCTTCGAGTGACGATGAATTCATAGCAATGCCAATCAAAGTGGAACTCGGCACTGATTCTAATAATCATGAACTAACTGAAGATCTCTGCAAAGATAGTGGCTTGGTGGGTGTTGCTGTGTCTGAAGCTGTAACAAGATCAAACAAACTCATAAAAGTGGAAGAATGCTATGACCAAGTAAGTGATGTAACTGGTCAATCAGTCGGATCTTTTGATGGTTTACTGGAAGATCAAAGTGTCAGTTCTTGGTGCCATGGATCGTTTTCGATGGATATTAAACGTGAAGAGACGGATGAAGCTGGTGAAGAAGATGTTTCCAAAAAACCTGAAAATGCTTTGTTGAAGACTGAACATGAAGACGTATCTGTGAGCGTCAAGAAGAAAGATTCATGGTACAGAAGAAGAAAGGAAGAAGACTTGCGAGTCTTTATTTGTAAGTTTTGCGGAGCAAAATTTGATGTAAGAACGCAATTAAGAGATCATTTGAAGGTGCATTCTGGGAAATCTCATGTATGTCCTCACTGCCCTGCTAAATTCACTTCAATGTCAACACTTCGGCATCATCTGAAAGTGCATTTCAGAACGTCTGCTGCAGGCAACACGGAAAAGTGGTTTCCTTGCTCACAGTGTTCGGCTAAATTTACAAAAAGTTATGACTTAGAATCTCATAAGATGCTACACTCAGGAGTCAAACCATTCTCGTGTTCGATGTGCCCTGCTAAATTTAGACTCAAATGTAGTCTAACGATGCACTCCAGAATCCATATGGAAGATCGATTCTCGTCATCTGTACCCAGTCCTGAAGAAGATTCACAGGAACGTTTGAATGAAGTTTGGAAAAAGGAACTTTCTGATGCTTTTGACTCATCGCCTACATCATTCCCGGAACCACCAAGCCAAGATCCAGATTCCTTTGTCTCTGGAGAGAATAAGCCCCCTGAAGATGTAATTTCTAAAGATCTTTTTGCATGTCCTCACTGTCCCGCAAAATATAAAAAAAAATGTTATTTCCAGACCCATTTAGAAGCTCACACCGATGCCGAAGGAACCTCTAAGAACAGGCAATTTTCTTGTCAACTTTGCTCTGCTAGATTTTCCAGGAAGTTTAATTTAACTGTGCACATGATGGCTCATACTGGTGATGAGCCATTCAAGTGTCCCAATTGCTCTGCTAAATTCGATCGTAAAAGCTCTTTATTGCTGCATCTAAAATCACACAAACTCAATTTAAAGTTCCGCACTAAGTCACGGCACGCCGCATCACTCAAGTCATATCCTCGAAAGACAAAAGGGCCAGGAGCAAGATTCTTGGCTGGAAAAGTGAAAAGACCATTGCAGAAAGAGAGAGTAATTCGTCAAGATGATTTTACATGCTCACACTGTCCAGCAAAATTTATGGATAATAGAAATTTAAAGGCTCATTTGAAAGTCCACTCAAACAAAACCATTCAAAATAGACCATTCTCTTGTCCATTTTGTTCTGCAAAATTTGGACACATTCGTACTTTGAAAGATCATATGGCGGTCCATACCGGTAAATATCCATATAAGTGTGGCGAATGTCCTGCCAAATTTTGTATTGAAAAGTCTTTGCGTAAACATATGAGAAGTCATCAGTATTGGCAATCTCTCTCAACTGAGCCAATTAAGAGTATGAAATCTGATTTGTGTAGCCAATCAGGAAGTGCAGAAACATCTATGGCTGACGCTACTGTGACGTATCATCCATCACAAGCCTCATTCGATGTGTCTTCTTTTTCTTGTACTCATTGCCCAGCAATCTTTAAAAGTAAAGTGTTCCTTGTTAAACACATGATGAAGCATGAAGATAAATCTTGCGTTGCCTGCCCACACTGCCCTGCAAAATTTACAAAGCGACAAAGTTTACTGCGTCATTTAAAAGCTCACTCGATCGGTGGTAATCGGCCGTTTTCCTGTCAAATGTGTTCTGCCAGATTTACATTAAATTACCATCTGGAGAACCATTTAGTGGTCCATACTGGCAAATATCCTTTTAGTTGTTCCCTATGTGCTTCCAAATTTGCTTGCGAGAGGGTTTTGAACGCACACATGAAATGTCATGCAAACAAGCAAAGTGAAACAAACAAATCTGAATTGAACAGCGAATCGAACAACACAGAAATACTTACGACAGACCATCCATTGGAACAAACTTCTCATAAATTGCCTTCCTTCTCCTGTACTATGTGCCCAGCAAATTACAAACGTAAAGTTTACCTTCTTAATCATATGAAGAAACACGAAGATAAATCTCGTTTTGTTTGCTCACACTGTCCTGCAAAATTTTTGAAGCATCAATGTTTTGTGCGTCATTTAAAAGCTCACTCAAAGGAAAGTGTTAATAGGCCGTTTGCTTGTCAAATGTGTTCTGCCAAATTTATATTAAATTTCCATCTGGAAGAACATATGGTGGTCCATACTGGCAAATATCCTTTTAAGTGTGCTCAATGTCCTTCCAAATTTGGTAGCAGGAGGATTTTGAAGTTACACATGGTGTATCATGCGAACAAGCAAAAGGAAGTAAACGAATCTGAACAGCGCAGCGAATCAAGCAATGCTGAAATGTTTGCGACAGAACATCCGTCGCAGGAAACTTCACATAAATTGCCTTCCTTTTCTTGTGCTGTGTGCCCAGCAAATTACAAAAGTCAAGTTTACCTTGCTAAACATATGAGGAAACATGACCGTTTTGTGTGCACACACTGCCCAGCAAAATTTACTGAAAAGAAAGGTCTGAAGTCTCATTTAAAGGTCCACTCAAAGAGAGAGAAAAAAAATAGGCCGTATTCTTGTCAAATGTGTTCTGCTTCATTTTTAGTGCAGTTTCATCTAGATGAGCATATAAAGGTTCATTCTGGCAACGAACCTTTTCGGTGCACCCAATGTCCTGCCAAATTTTTTAGCGAGAGATATTTAAATTTACATATGAGATGTCACGCAAACATGCAAAGTGAGGTTAACGAATCTGAACAGCGCAGTGAATCGAGCAATGCAGAAATATCTGTGACTTACCATCCATCGAGACAAGTTTCACTCGAAATGCCTTCTTTTTCCTGCACTATATGCCCAGCAATATACAATAGTGAAGTTTACTTTGTTAAACATATGAAGAAACATGAAGACAAATATTCCTTTACTTGTCCACATTGTCCAGCAAAATATATCACAAAACGTAATTTAAACTATCATTTGGAAGCTCACTCAAAGGAAGGTCTCAATAGGCCATTCTCATGTAAAATGTGTTCTGCCAAATTTATGACGAATTACCATCTAAAGGCCCATTTATTGGTCCATACCGGCAAATATCCTTTTAGGTGTACCCAATGTTCTGCCAAATTTGGTATCAAAGCGTTTTTGAGGTCACACATGAAAAGTCATCTAAAAGCGGAATCTCTCTCAATCGAGCAAAGTGAGAGTAATGAATCTGATCAGTGCACTCAATCGGGCGTTGCTGAAATATTTGTGGCTGGCACTCCTTCAACCGACCATTCGCCAGAACAAACTTCACACAAACTGCCTTCATTTTCCTGCACTCAGTGCACAGCAGTATACAAAAAAAGAATTTACTTCATGAAACACTTGAAGAAACACGAAGACAAATCTCGTTATGCATGCATACACTGCCCTGCAAAATTTAATGAACATCGTCATTTACGGCAGCATTTGAAAGCTCACGTAGGAGGAGGACGAGAAAGACCATATTCTTGTAATTCATGCTCTGCCAAATTTATATTCAAAACACATCTGAAGGAACATTTACCAGTCCATACTGGCAAATTTCCTTTTAGGTGCCCCCATTGTCCTGCCAAATTTGGTAGCAATAGGTGTTTTCAGTCACACATGAGACGTCATCTAAATCCTGAGTCACTCCTTAACAAGGAACAAGAGAATAATGGATCTGAGAGATGTAGACTTTCAGACAAATCAGAAACAGTTGTGACTGACTCCATAATGACAGATCATCTTTCCGTACAGTCTCCTCACAAAATGTCTTCCTTTTCTTGTACTCAATGCCCCGCAATATACAAAAGTAAAATTTACTTTGATAACCACATGAAGACACACAAAGAGAAATCATATTACTACTGCGCTCATTGTCCTTCAAGGTGTGAGACAAAACACACGTTAAAGAAACATTTAAAGTGTCACTCAAGCAAACATGCGGATGATAGAATATTCGCTTGTCCACATTGCTCTGCTAAATTTAATCGACTTTCCGCCTTGAAAGCTCATAACTATGTGCACACAGGAAAATCACCTTTCTCATGTCACTTATGTTCCAATTCTTTTATCATGAAGTGTCATTTAGTTTCACACATGGCGATAAAACATAGCAATACTGATTCATTATTCGAAAGCTCTCCTGTATCTCAGAACTTTGCTTCCTCAGAATGCTCGAAAGCCAGTGCAAGGCCATTGTTTTCTTGTAAGCACTGCACAGCGAAATTCCTCGAAAAAACATCATTGGAGAACCATGAAATGTTGAAACATGCAGATACGAATGTTTTTCGCTGCCCATTGTGTCCTGCTGAATTTCACAAAAACGTTTTATTAAATAGACATTTGAAAGTGCATGACAAGCTTAATAAGTGCAAGCAGTGTTCAGCAAAATTCTGGAAAAAGGCTAATCTACTTATTCATGTGAATAAATATCATGCAAATGAAAAACTTGGGAGTAACTTAAAAATGTCTCATTTGAAAGTGCATGGTAATAAGACTGTTGATAAAGTGTTTGCATGCAAGCACTGTGGCAAAAAATGCTGTGACAAGTATTCTCTGATTAGACATATGAAGATGAAACATGCAAACAAATCTGTATCATTGCAACCAAAACAAGACGGCCCAAAAACGCGTCATGATGTTTGCCCATTTTGCCCGGCCAAATTCCTCTGCAAAAGCTCATTACGGAAACATTTGTTAGTTCATCAAGACAGAGGTCTAAAACCATATACCTGCAATCATTGTTCTGCAAGCTATTCGCAAGAGCGGTTTTTGACGGAGCATCTATTGGTGCATTCTACAGATGAATCTATGTTTTCATGTTCTTATTGCCAGGCTGAATTTAGCTCGTTTTTAAACCTGTCCGCTCATTTAAGGAGACACCAGAGCGATCCATTGCCTGTTGAATGTTAG
- Protein Sequence
- MTIFKKYPRVVLERCDLNKLRAELGIEIGEATSAIVEGKGVSRTNSCSHEEYQSRSDQGQATLQSSDVSCSLMVNERVNNCDSLSVERQDTDDTSQNLNHLFRQQLNHGSNSDRELDENASSSDDEFIAMPIKVELGTDSNNHELTEDLCKDSGLVGVAVSEAVTRSNKLIKVEECYDQVSDVTGQSVGSFDGLLEDQSVSSWCHGSFSMDIKREETDEAGEEDVSKKPENALLKTEHEDVSVSVKKKDSWYRRRKEEDLRVFICKFCGAKFDVRTQLRDHLKVHSGKSHVCPHCPAKFTSMSTLRHHLKVHFRTSAAGNTEKWFPCSQCSAKFTKSYDLESHKMLHSGVKPFSCSMCPAKFRLKCSLTMHSRIHMEDRFSSSVPSPEEDSQERLNEVWKKELSDAFDSSPTSFPEPPSQDPDSFVSGENKPPEDVISKDLFACPHCPAKYKKKCYFQTHLEAHTDAEGTSKNRQFSCQLCSARFSRKFNLTVHMMAHTGDEPFKCPNCSAKFDRKSSLLLHLKSHKLNLKFRTKSRHAASLKSYPRKTKGPGARFLAGKVKRPLQKERVIRQDDFTCSHCPAKFMDNRNLKAHLKVHSNKTIQNRPFSCPFCSAKFGHIRTLKDHMAVHTGKYPYKCGECPAKFCIEKSLRKHMRSHQYWQSLSTEPIKSMKSDLCSQSGSAETSMADATVTYHPSQASFDVSSFSCTHCPAIFKSKVFLVKHMMKHEDKSCVACPHCPAKFTKRQSLLRHLKAHSIGGNRPFSCQMCSARFTLNYHLENHLVVHTGKYPFSCSLCASKFACERVLNAHMKCHANKQSETNKSELNSESNNTEILTTDHPLEQTSHKLPSFSCTMCPANYKRKVYLLNHMKKHEDKSRFVCSHCPAKFLKHQCFVRHLKAHSKESVNRPFACQMCSAKFILNFHLEEHMVVHTGKYPFKCAQCPSKFGSRRILKLHMVYHANKQKEVNESEQRSESSNAEMFATEHPSQETSHKLPSFSCAVCPANYKSQVYLAKHMRKHDRFVCTHCPAKFTEKKGLKSHLKVHSKREKKNRPYSCQMCSASFLVQFHLDEHIKVHSGNEPFRCTQCPAKFFSERYLNLHMRCHANMQSEVNESEQRSESSNAEISVTYHPSRQVSLEMPSFSCTICPAIYNSEVYFVKHMKKHEDKYSFTCPHCPAKYITKRNLNYHLEAHSKEGLNRPFSCKMCSAKFMTNYHLKAHLLVHTGKYPFRCTQCSAKFGIKAFLRSHMKSHLKAESLSIEQSESNESDQCTQSGVAEIFVAGTPSTDHSPEQTSHKLPSFSCTQCTAVYKKRIYFMKHLKKHEDKSRYACIHCPAKFNEHRHLRQHLKAHVGGGRERPYSCNSCSAKFIFKTHLKEHLPVHTGKFPFRCPHCPAKFGSNRCFQSHMRRHLNPESLLNKEQENNGSERCRLSDKSETVVTDSIMTDHLSVQSPHKMSSFSCTQCPAIYKSKIYFDNHMKTHKEKSYYYCAHCPSRCETKHTLKKHLKCHSSKHADDRIFACPHCSAKFNRLSALKAHNYVHTGKSPFSCHLCSNSFIMKCHLVSHMAIKHSNTDSLFESSPVSQNFASSECSKASARPLFSCKHCTAKFLEKTSLENHEMLKHADTNVFRCPLCPAEFHKNVLLNRHLKVHDKLNKCKQCSAKFWKKANLLIHVNKYHANEKLGSNLKMSHLKVHGNKTVDKVFACKHCGKKCCDKYSLIRHMKMKHANKSVSLQPKQDGPKTRHDVCPFCPAKFLCKSSLRKHLLVHQDRGLKPYTCNHCSASYSQERFLTEHLLVHSTDESMFSCSYCQAEFSSFLNLSAHLRRHQSDPLPVEC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -