Tvap015786.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trialeurodes vaporariorum
Gene Symbol
-
Assembly
GCA_011764245.1
Location
HIC:53820638-53824010[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 2.6e-05 0.0018 18.7 4.8 1 23 404 427 404 427 0.98
2 19 0.0033 0.22 12.1 0.9 1 17 433 449 433 455 0.91
3 19 0.0053 0.36 11.4 5.7 1 23 461 483 461 483 0.97
4 19 5.4e-07 3.7e-05 24.0 3.2 1 23 489 511 489 511 0.99
5 19 1.5e-05 0.001 19.4 3.9 1 23 517 539 517 539 0.99
6 19 2e-06 0.00013 22.2 3.1 1 23 545 567 545 567 0.99
7 19 7.8e-07 5.3e-05 23.5 2.7 1 23 573 595 573 595 0.99
8 19 2.1e-05 0.0014 19.0 3.6 1 23 601 623 601 623 0.99
9 19 1.5e-05 0.001 19.4 1.3 1 23 629 651 629 651 0.98
10 19 2.2e-07 1.5e-05 25.2 3.5 1 23 657 679 657 679 0.99
11 19 1e-06 7e-05 23.1 1.9 1 23 685 707 685 707 0.99
12 19 6.4e-07 4.4e-05 23.7 1.4 1 23 713 735 713 735 0.99
13 19 6.4e-07 4.4e-05 23.7 1.4 1 23 741 763 741 763 0.99
14 19 8.1e-06 0.00055 20.3 4.9 1 23 769 791 769 791 0.97
15 19 7.8e-06 0.00053 20.3 0.3 1 21 797 817 797 818 0.95
16 19 2.1 1.4e+02 3.2 0.5 12 23 889 900 887 900 0.92
17 19 7e-05 0.0048 17.3 5.8 1 23 906 928 906 928 0.99
18 19 1.9 1.3e+02 3.4 0.7 11 23 942 954 938 954 0.89
19 19 0.0003 0.02 15.3 1.7 3 23 962 982 960 982 0.96

Sequence Information

Coding Sequence
ATGGAAGGTAATGCTTCAATCCAACCCATTCGTAAATCAATCCACAATAAAGCAATGGAAGGTAATGCTTCAATCCAACCCATTCGTAAAAATGACACTGATTTAGCGAGAGAGCTGTTGCCGCTAGAAAGCAAGCTCACTAGGAATACAATTCATCGGTCACTTATTTGTAATAACTCACTGTATGACTCTGATGAACCTCCTTCGGTCCCCTCTTTCAAATTATCAATTATTCTACGAACAGAAGATTATAACGGAGGGATACTTGGTCCCGAGTCATTCAGTCGTTCAACAAGTAACGGTGTATCCAATAATTATGCCATTTTCAACGCAGGGAAGGCAGTAAAAGACCATACTCTGACGATAAACGAAGATGAAGTGGAAGCCTGGTTTGGAAAGAGGCTAAAAATCATTTTGAAAAGAGTAGATGAGGTAAAACAAGAAGTCTCAAGAGAAGGGAAGAAATTTCAACCTCATCCTTGTCATACCGAATTTTACAGTCAAAGAAGTAATTCTGAAGGTGCAGTGCCCACCTCAGAGTTTTCCTCGGCCGAACTCATAAAAACTGAAAATAATCTCAGCTTTGAAGAGGAGAGTGTGGGAACGTCACAATTTAAACCCGAATTGGTAGATTATTTCACCACCTTCGAAGAAACCGACGCTAAAAATTTTGAATTTAGCGATGTTCAGTTCTTAGATTCAAATGTCAAAATGGAACCAGATCAGGAAGAACAAGATGCTTTATTCCGGCCAGCCGGTAGTAAATCAACGAATTTGCTTTTCAAGCAAATAGATTCTAACATCCGTTATTCGATAGTAAGTAAGGATGTTCACAATAAGTCTAGTCTCGATCTTTGTGAAGGCTTTTCGGATGGACAAATAAAATTAGACATCAGTATTATGCGCGAGAATGCGATAGAAGATTCAATTGAACTCAAGGAAGAAACTGCAATTGAACCAACCAGCCAAATCAAAATAGATGGTGAGCTGTATGCGCGAGTGGCCAATCCTGCGAATCTTGAGAAAACCCCGTATTCACAGCGTCACAATGCATACTACACCTCAGAATGCTCTGAAAATAGTGATCTTAAAAACCGTGAAACAGAACACATTGAAGAACATCGCATCGAAATCAATCAATTCAATGCAAAATTAATAAACAAAAAAGACATAATTAGACATATGAAAACACAAATTGGCGAAGAACCCTTCAAATGCACGCAGTGCAACTCATCATTTTCTCAGAAGAACCATCTCATTACACATATCAGAAAACAACATACTGGTAAAAAACCCTTCACTTGCACACATTGCAATTCAACATTTACTCAACAAAGCTCTCTGATTACACAAATCAGAACACATTCTGGCGAAAAACCCTTTGCATGCACATTCTGCAGCACAACATGTTCTGTGAAGAGCTGTTTGCTTCAGCATATCAGAACTCACACTGGCGAAAAACCCTTCACTTGCACATACTGCAGCAAAACATTTTCTATGAAGAAAAATTTGGTTCAGCATATCAGAACTCACACTGGCGAAAAACCCTTCACTTGCACACATTGCAATTCAACATTTTCTGTGAAGAGAAATTTGGTTCAGCATATCAGAACTCACACTGGCGAAAAACCCTTCACTTGCGCACATTGCAATTCAACATTTTCTCGGAAGAGCCTTCTGATTAATCATATCAGAACTCACACTGGCGAAAAACCCTTCACTTGCACATACTGCAGCAAAACATTTTCTAAGATGAGTAATTTGCTTCTGCATATCAGAACTCACACTGGCGAAAAACCCTTCACTTGCACACATTGCAATTCAACATTTTCTGAACGAGGCTCTCTGACTACACACATCAGAACACATTCTGGCGAAAAACCCTTTGCATGCACATACTGCAGCACAACATTTTCTGTGAAGAGCAGATTGGTTCAGCATATTAGAACTCACACTGGCGAAAAACCCTTCACTTGCACATACTGCAGCAAAACATTTTCTATGAAGAAAAATTTGGTTCGGCATATCAGAACTCACACTGGCGAAAAACCCTTCACTTGTACATACTGCAGCACAACATTTTCTGTGAAGAGCAGTTTGGTTCAGCATATTAGAACTCACACTGGCGAAAAACCCTTCACTTGCGCGCATTGCAATGCAACATTTTCTCAGAAGAGCCTTCTGATTATTCATATCAGAACTCACACTGGCGAAAAACCCTTCACTTGCGCGCATTGCAATGCAACATTTTCTCAGAAGAGCCTTCTGATTATTCATATCAGAACTCACACTGGCGAAAAACCCTTCTTTTGCACACATTGCAATTCAACATTTTCTCGACGAAGCTCTCTGATTACACACATCAGAACACATTCTGGCGAAAAACCCTTTGCATGCACATACTGCAGCAAAACATTTTCTGTGAAGAGCAGTTTGGTTCAGCATATTAGAATTTGGTTCAGCATATTAGAAGTCACACTGGCGAAAAACCCTTTGCATGCACATACTGCAGCACAACATTTTCTAGGAAGAGCAGTTTGCTTCAGCATATCAGAACTCACACTGGCGAAAAACCCTCATTTTCACACATTGCAATTCAACATTTTCTCAAAGGAGGTACCTGAATACACATATCAGAAAACATTCTGGCAATTCAACATTTTTCAAAATAGCTCTCTGATTAGACATAATAGAACACATTCTGGCGAAAAACCCTTCACATGCGCGCACTGCAGTTCAACATTTTCTCAAAAAAGGCATCTGATTACACATATCAGAACACATTCTGGCGAAAAACCCTTCGCATGCATACATTGTAATTCATGTCGGAAGAGCCTTCTGATTACACATATCAGAGCACATTCAGGCGAAAAACTCCTCGCATGCACAAATTGTAATTCAAAATTTTCTCGGAAGAGCCTTCTGATTAATCATAGCAAAACACATACTGGCGAAAAACCCTCTGCTATATCTTTAAGAAATAGTGTTATATTTTTATACATGATGAGAAATAAACTAAAACAGAGACTTGGACGATTAGACGTGGACTGTAATTAA
Protein Sequence
MEGNASIQPIRKSIHNKAMEGNASIQPIRKNDTDLARELLPLESKLTRNTIHRSLICNNSLYDSDEPPSVPSFKLSIILRTEDYNGGILGPESFSRSTSNGVSNNYAIFNAGKAVKDHTLTINEDEVEAWFGKRLKIILKRVDEVKQEVSREGKKFQPHPCHTEFYSQRSNSEGAVPTSEFSSAELIKTENNLSFEEESVGTSQFKPELVDYFTTFEETDAKNFEFSDVQFLDSNVKMEPDQEEQDALFRPAGSKSTNLLFKQIDSNIRYSIVSKDVHNKSSLDLCEGFSDGQIKLDISIMRENAIEDSIELKEETAIEPTSQIKIDGELYARVANPANLEKTPYSQRHNAYYTSECSENSDLKNRETEHIEEHRIEINQFNAKLINKKDIIRHMKTQIGEEPFKCTQCNSSFSQKNHLITHIRKQHTGKKPFTCTHCNSTFTQQSSLITQIRTHSGEKPFACTFCSTTCSVKSCLLQHIRTHTGEKPFTCTYCSKTFSMKKNLVQHIRTHTGEKPFTCTHCNSTFSVKRNLVQHIRTHTGEKPFTCAHCNSTFSRKSLLINHIRTHTGEKPFTCTYCSKTFSKMSNLLLHIRTHTGEKPFTCTHCNSTFSERGSLTTHIRTHSGEKPFACTYCSTTFSVKSRLVQHIRTHTGEKPFTCTYCSKTFSMKKNLVRHIRTHTGEKPFTCTYCSTTFSVKSSLVQHIRTHTGEKPFTCAHCNATFSQKSLLIIHIRTHTGEKPFTCAHCNATFSQKSLLIIHIRTHTGEKPFFCTHCNSTFSRRSSLITHIRTHSGEKPFACTYCSKTFSVKSSLVQHIRIWFSILEVTLAKNPLHAHTAAQHFLGRAVCFSISELTLAKNPHFHTLQFNIFSKEVPEYTYQKTFWQFNIFQNSSLIRHNRTHSGEKPFTCAHCSSTFSQKRHLITHIRTHSGEKPFACIHCNSCRKSLLITHIRAHSGEKLLACTNCNSKFSRKSLLINHSKTHTGEKPSAISLRNSVIFLYMMRNKLKQRLGRLDVDCN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-