Tvap009145.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trialeurodes vaporariorum
Gene Symbol
-
Assembly
GCA_011764245.1
Location
HIC:19568898-19571591[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 1.3e-06 9.1e-05 22.7 4.6 1 23 393 415 393 415 0.99
2 18 0.001 0.069 13.7 4.7 1 23 421 443 421 443 0.99
3 18 2.3e-06 0.00016 22.0 2.5 1 23 449 471 449 471 0.99
4 18 3.5e-06 0.00024 21.4 5.1 1 23 477 499 477 499 0.98
5 18 1.2e-05 0.00084 19.7 6.1 1 23 505 527 505 527 0.99
6 18 0.00012 0.0079 16.6 5.0 1 23 533 555 533 555 0.98
7 18 9.8e-07 6.6e-05 23.2 3.2 1 23 561 583 561 583 0.98
8 18 2.7e-06 0.00018 21.8 4.1 2 23 590 611 589 611 0.97
9 18 2e-06 0.00014 22.2 3.2 1 23 617 639 617 639 0.99
10 18 0.0018 0.12 12.9 3.9 1 23 645 667 645 667 0.99
11 18 7.4e-06 0.0005 20.4 4.2 1 23 673 695 673 695 0.99
12 18 3e-06 0.00021 21.6 6.5 1 23 701 723 701 723 0.99
13 18 2.7e-06 0.00018 21.8 5.1 1 23 729 751 729 751 0.99
14 18 4.4e-06 0.0003 21.1 2.8 1 23 757 779 757 779 0.99
15 18 0.00068 0.046 14.2 3.9 1 23 785 807 785 807 0.99
16 18 7.4e-06 0.0005 20.4 4.2 1 23 813 835 813 835 0.99
17 18 3e-06 0.00021 21.6 6.5 1 23 841 863 841 863 0.99
18 18 4.4e-06 0.0003 21.1 2.8 1 23 869 891 869 891 0.99

Sequence Information

Coding Sequence
ATGAACAAAACAAAGCACAATGAAGTAATGGAAGGTAAAACTGCAATCCAATTCAATCGTAAAAATGATCCTGATTTGGTGCGAGAGCTGTTACCGGTAGAAAGCGAGCCAACGAGGAATCAAATTGATCCGCCACTTACGAACTCACCGTCCGACTCGGACCAACATCCCTCGGCCCCCTCATTCAAATTAATAATAAGTCTTCAAACAAAACATGTTGATTCGGGGATGTTTGGTCACGAGTCACTCGGCCGTTTACCTAGAGACGGTGTATCCAACAACTATGTGAAATTCAACGCAGGGAAGGCAGCCAAAGACCACACTCTAACTATAAACGAAGATGAAGTGGAAGCCTGGTTTGGAAAGAAGCTGAAAATCATTTTGAAAAGAGTGGACGAGATAAAACAAGAAGACTCAAGAGAAGAGAGAAGACGGCAACCTGATCCTTGTCATACCGAATTGGCAGGTTGTAGGAGTTACTCTGAAGATGCAGTAGTTACCTCAGAGTTTTGTTTGGCTGAAACCATAGACTGTAAGAATATTCTCAGCTTTGAAGAGGAGAGAGTGGAAATGTCTAAATTTAAACACAAATTGGTAGATAATTACACCACCTTCGAAGAAACTGACACTAAAGACTTTGTGTTCAGCGATGTTCAGTTCTTGTCTTCAAATATCAAAATAGAACCAGATCAGGAATCACAAGATTCTTTACTCCAGTCAGCCGGTAGTAAAACCACAGATTTGCTGATGCAGCAAACATATTCTAACATCCCTTATCCGATTGTAAATGAAAATGTTCCGAATATGCCACTTTTCGACATTTGTGAAGGCTTTTTGGATGGACAAAAGAAATCAAACATCAGTAGTGTGCAACAGAATGCGATGGAAGATTCAATTCGAGTCAAGGAAGAAACTGTAGCTGAATCAACCCACCAAATATATAAAAATGGCGAGCTGTATTCGCGAGTAGCCAGTCCTGTGAGCCTTGAGGTACTCCAGTGTGCAAAACGTCAGAATTCGTTCTCCATATCAGAATTCTCTAATAAAAGCGCTCTGAAAAGACGTAAAAGAGAACATTTTGACGAAAAACCCATCGGATGCAATCTTTTCAATTCAAAATTTAGCAACCAAAACGACAAAATTAGACGAATGAAAAAACATACTGGAACGGAACCCTACACATGCGCACATTGCAATTCCACATTTTCTCAAAAGAACAATCTGCGTAAACATATTAGGACACATGTAGACAAAAAACCCTTCACATGCACACACTGCAATTCTTCATTTGGTTGGAAGAGTCACCTGATTACGCATATCAGAACCCATACCGGCGAAAAACCCTTCACATGCACACACTGCAATTCAGCATTTTCTCGAAAGTTTGATTTGATTGCGCATATCAGAACGCATACCGGCGAGAAACACTTTGCATGCACACACTGCAATTCTTCATTTTCTAGGAAGAGCCATCTGATTTTGCATATCAGAACACATACCGGCGAAAAACCCTTCAAATGCACACACTGCGATTCTTTATTTTCTAGGAAGAGCCATCTGATTTCGCATATCAGAACACATACCGGCGACAAACCCTTCACATGCACCCACTGCAATTCAGCATATTCGCGAAAGTTCAATTTGATGACGCATATCAAAAAACATACCGGCGAGAAACCCTTTGCATGCACACACTGCAATTCTTCTTTTTCTCAGAAGAACAATCTGCGTGCACATATCAGGACACACGTCGGCGAAAAACCCCTCAAATGCACATACTGCAAATCTTCATTTTCTAGGAAGAGCCATCTGATTTTGCATATCAGAACACATACCGGCGAAAAACCCTTCAAATGCACACAGTGCCATTCTGCATTTTCTCAGAAGAGCGATCTGATTACGCATATCAGAACACATACCGGCGAAAAACCCTTCAAATGCACCCACTGCAGTTCAACATTTACTTGGAAGAGCCAACTGATTACGCATATCACAACACATACTGGCGAAAAACCCTTCACATGCACCCACTGCAATTCCGCATTCGCCCACAAGAGCGCTTTGAATACGCATATTAGAACACACACCGGCGAAAAACCCTTCACATGCACACATTGCCATTCTTCTTTTTCTCAGAAGAACAATCTGCGTGCACATATCAGGACACACGTCGGCGAAAATCCCTTCAAATGCACATACTGCAGATCTTCATTTTCTAGGAAGAGCCATCTGATTTTGCATATCAGAACACATACCGGCGAAAAACCCTTCAAATGCACACAGTGCCATTCTGCATTTTCTCAGAAGAGCGGTCTGATTACGCATATTAGAACACATACCGGCAAAAAACCCTTCAAATGCACCCACTGCAATTCAACATTTACTTGGAAGAGCCAACTGATTACGCATATCACAACACATACTGGCGAAAAACCCTTCACATGCACCCACTGCAATTCCGCATTCGCCCACAAGAGCGCTTTGAATACGCATATCAGAACACACACCGGCGAAAAACCCTTCACATGCACACATTGCCATTCTTCTTTTTCTCAGAAGAACAATCTGCGTGCACATATCAGAACACATACCGGCGAAAAACCCTTCAAATGCACACAGTGCCATTCTGCATTTTCTCAGAAGAGCGGTCTGATTACGCATATCAGAACACATACCGGCAAAAAACCCTTCTAA
Protein Sequence
MNKTKHNEVMEGKTAIQFNRKNDPDLVRELLPVESEPTRNQIDPPLTNSPSDSDQHPSAPSFKLIISLQTKHVDSGMFGHESLGRLPRDGVSNNYVKFNAGKAAKDHTLTINEDEVEAWFGKKLKIILKRVDEIKQEDSREERRRQPDPCHTELAGCRSYSEDAVVTSEFCLAETIDCKNILSFEEERVEMSKFKHKLVDNYTTFEETDTKDFVFSDVQFLSSNIKIEPDQESQDSLLQSAGSKTTDLLMQQTYSNIPYPIVNENVPNMPLFDICEGFLDGQKKSNISSVQQNAMEDSIRVKEETVAESTHQIYKNGELYSRVASPVSLEVLQCAKRQNSFSISEFSNKSALKRRKREHFDEKPIGCNLFNSKFSNQNDKIRRMKKHTGTEPYTCAHCNSTFSQKNNLRKHIRTHVDKKPFTCTHCNSSFGWKSHLITHIRTHTGEKPFTCTHCNSAFSRKFDLIAHIRTHTGEKHFACTHCNSSFSRKSHLILHIRTHTGEKPFKCTHCDSLFSRKSHLISHIRTHTGDKPFTCTHCNSAYSRKFNLMTHIKKHTGEKPFACTHCNSSFSQKNNLRAHIRTHVGEKPLKCTYCKSSFSRKSHLILHIRTHTGEKPFKCTQCHSAFSQKSDLITHIRTHTGEKPFKCTHCSSTFTWKSQLITHITTHTGEKPFTCTHCNSAFAHKSALNTHIRTHTGEKPFTCTHCHSSFSQKNNLRAHIRTHVGENPFKCTYCRSSFSRKSHLILHIRTHTGEKPFKCTQCHSAFSQKSGLITHIRTHTGKKPFKCTHCNSTFTWKSQLITHITTHTGEKPFTCTHCNSAFAHKSALNTHIRTHTGEKPFTCTHCHSSFSQKNNLRAHIRTHTGEKPFKCTQCHSAFSQKSGLITHIRTHTGKKPF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-