Tvap014280.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Trialeurodes vaporariorum
Gene Symbol
-
Assembly
GCA_011764245.1
Location
HIC:37033977-37036499[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 9.7e-05 0.0066 16.9 3.6 1 23 282 304 282 304 0.95
2 20 4.9e-06 0.00033 20.9 3.5 1 23 310 332 310 332 0.98
3 20 0.0062 0.42 11.2 4.1 1 23 338 360 338 360 0.97
4 20 3.3e-06 0.00022 21.5 4.4 1 23 366 388 366 388 0.98
5 20 1.4e-05 0.00096 19.5 3.8 1 23 394 416 394 416 0.99
6 20 8.6e-07 5.8e-05 23.3 4.2 1 23 422 444 422 444 0.99
7 20 6.8e-06 0.00046 20.5 1.7 1 23 450 472 450 472 0.98
8 20 2.5e-05 0.0017 18.8 1.4 1 23 478 500 478 500 0.98
9 20 2.6e-05 0.0017 18.7 1.7 1 23 506 528 506 528 0.97
10 20 1.8e-05 0.0012 19.2 7.3 1 23 534 556 534 556 0.98
11 20 2.8e-06 0.00019 21.7 2.1 1 23 562 584 562 584 0.98
12 20 5.4e-06 0.00037 20.8 2.3 1 23 590 612 590 612 0.98
13 20 1e-06 7e-05 23.1 1.5 1 23 618 640 618 640 0.97
14 20 7.5e-05 0.0051 17.2 1.5 1 23 646 668 646 668 0.97
15 20 9e-07 6.1e-05 23.3 1.8 1 23 674 696 674 696 0.98
16 20 0.0004 0.027 14.9 3.0 1 23 702 724 702 724 0.98
17 20 0.0018 0.12 12.9 3.5 1 23 730 752 730 752 0.96
18 20 2.8e-06 0.00019 21.7 3.5 1 23 758 780 758 780 0.98
19 20 1.7e-05 0.0011 19.3 5.8 1 23 786 808 786 808 0.99
20 20 4.3e-05 0.0029 18.0 1.9 1 23 814 836 814 836 0.97

Sequence Information

Coding Sequence
ATGGAAGGTAAAACTTCAATCCAGTTCAATCATAAACGTTACTTTAAATCAGCCAAAGATTCATTGAAGTTAGACAGCGAGCTCTGGAGAAATAATCGTCATCCTGCTCTCTGTAGGCCAGTCGTTGTTGAACCCCCCTTAGTTCCCACTTTAAAATTAAGAATTATTCTACGGACCGAACATCTTGATACGGAAAAAATTCTAACTAAACCCACCAATCATTCAACCACAAATACTGTATCTTTCGAATCTGTCATTTTCAATGCGGGAAAAGCGTCCAAAGACCAAACTTTGACCATAAATGAAGAAGATGTGGAAGACTGGTTTGGGAAAAAGCTGAAAGTTATTGTGGAAAGAGTGGACAAGGTAGCGAGTAGAGACTCTAGGAAAGAGGGAAGACCGCCATCTGAATATCACCATAGAGAATTTTACGAGCACACAAGTCATCATGAAACTGCTGAAGTAAATTCATCGTTTCTATGCAATGAAAATTGTTTGCATGAAATAATTAAAGCTGAGGAAAATCTCAGCGGTGAAGAGGATTTCACAGAAATATTCCAAGCTAAACATGAAACGATGGATGATTTGAATGACTTGGAAGAGGAAGGTGATGTCAAAGGTTTTGGAATAGATTCTATTCAGTCCACTTGTACAAATGTAAATTTGGAACCAGATTGGGGCAAAAAAGGAATTTTGCTCGAGTTAGTCAAAAGCATTTCCTCAATCAAGCCAATATTACCAGCAGGTGAAAAGAAATATGAAGTTCTCACGAGTAGGTCTTATCCGAATACTAAACAAGCCAGTCTGGATAAACAAATCAAAACACACACTCTCCAAAAACATTTTCTATGCGCTCACTGCAATGCAAAATTTTATGAGAAAAGCAAACTGAGGAGGCACATCAGAACACACAGTGGCGAAAAACCCTTTGCATGCACTCACTGCAATTCGAAATTTTCTAGGAACAGCACACTGAATATTCACATCAGGACACATACTGGCGAAAAGCCCTTTGCATGCTCTCACTGTAATTCAAAATTTTCTGCAATATGTAATCTGAAAACGCACATCAGAATACATACTGGCGAAAAACCCTTTGCTTGCACTCACTGCAATTCAACATTTTCTAGCAAAAGCACATTGAAGAGTCACATCAGAACGCACACTGGCGTTAAACCCTTTACATGCGCTCACTGCAATTCAAAATTTGCTAGCAAAAGCACATTGAAGAGTCACATCAGAACGCACACTGGCGTTAAACCCTTTACATGCACTCACTGTAATTCAAAATTCTCTGATAAAAGCAATCTGATTACGCACATTAGAACACATACTGGCGAAAAACCTTTTACTTGCGCTGCCTGCAGTTTAAAATTTTCTAGTAAAAGTACGCTGAGGCGTCACATCAGGACACACACTGGCGAAAAACCTTTTACTTGCGCTGCCTGCAGTTTAAAATTTTCTGATAAAAATACGCTGAGGCGTCACATCAGGACACACACTGGCGAGAAACCCTTCGCATGCACTTACTGCAATTCAAAATTTTCTACCAAAGTCACTCTGAAGAGGCACATCGGAACACACACTGGCGCTAAACCCTTTGAATGCCCTCACTGCAATTCAAAATTTTCTAGAAAATGTAATCTGAAAACGCACATTAGAAGACATACTGGCGAACAACCCTTTGCATGCACTCACTGCAATGCAAAATTTTCCGGAAAAAACAATCTGTGGAGGCACATCAGGACTCATACCGGCACTAAACCCTATGCATGCACTCACTGTAATTCAAAATTCGCTGACAAAAGAAATCTGAATATTCACATTAGAACACACACTGGCGAAAAACCCTTTGCTTGTGCTCACTGCAGTGCAAAATTTTCCGATAAAAGCAATCTGAGGATTCACATCAGGACACACACTGGCGAAAAACCCTTTGCATGCACTCAGTGCAATTCGAAATTTTCTGCCAAAGTCACTCTGAGGAGGCACATCAGAACACACACTGGCGCTAAACCCTTTGAATGCCCTCACTGCAATTCAAAATTTTCTAGAATAGGTAATCTGAAAAGGCACATTAGAATACATACTGGCGAAAAACCCTTTGCTTGCACCCATTGCAGTTCAAAATTTTCTGATAAAAGTGTGCTGATCAGTCACACCAGGACTCATACTGGCGAAAAACCCCATGCATGCACCCACTGCAGTTCAAAATTTTCTGTTAAAAGTGTGCTGATCAGTCACATTAGGACTCATACTGGCGAAAAACCCTTTGCATGCACTCACTGCAATTCAAAATTTGCTAGCAAAAGCAATCTGAGGAGTCACATCAGAACACATACTGGCGCTAAACCCTTCACATGCACTCACTGTAATTCAAAATTCTCAAGCAAAAGCTATCTGAGTACGCACATTAGAACACATACTGGCGAAAAACCCTTTGCTTGCGCTCACTGCAATGCAAAATTTTCCGAGAAAGGCAGTATGAAGAGGCACATCAGAACACACATTGGTGCTAAATAA
Protein Sequence
MEGKTSIQFNHKRYFKSAKDSLKLDSELWRNNRHPALCRPVVVEPPLVPTLKLRIILRTEHLDTEKILTKPTNHSTTNTVSFESVIFNAGKASKDQTLTINEEDVEDWFGKKLKVIVERVDKVASRDSRKEGRPPSEYHHREFYEHTSHHETAEVNSSFLCNENCLHEIIKAEENLSGEEDFTEIFQAKHETMDDLNDLEEEGDVKGFGIDSIQSTCTNVNLEPDWGKKGILLELVKSISSIKPILPAGEKKYEVLTSRSYPNTKQASLDKQIKTHTLQKHFLCAHCNAKFYEKSKLRRHIRTHSGEKPFACTHCNSKFSRNSTLNIHIRTHTGEKPFACSHCNSKFSAICNLKTHIRIHTGEKPFACTHCNSTFSSKSTLKSHIRTHTGVKPFTCAHCNSKFASKSTLKSHIRTHTGVKPFTCTHCNSKFSDKSNLITHIRTHTGEKPFTCAACSLKFSSKSTLRRHIRTHTGEKPFTCAACSLKFSDKNTLRRHIRTHTGEKPFACTYCNSKFSTKVTLKRHIGTHTGAKPFECPHCNSKFSRKCNLKTHIRRHTGEQPFACTHCNAKFSGKNNLWRHIRTHTGTKPYACTHCNSKFADKRNLNIHIRTHTGEKPFACAHCSAKFSDKSNLRIHIRTHTGEKPFACTQCNSKFSAKVTLRRHIRTHTGAKPFECPHCNSKFSRIGNLKRHIRIHTGEKPFACTHCSSKFSDKSVLISHTRTHTGEKPHACTHCSSKFSVKSVLISHIRTHTGEKPFACTHCNSKFASKSNLRSHIRTHTGAKPFTCTHCNSKFSSKSYLSTHIRTHTGEKPFACAHCNAKFSEKGSMKRHIRTHIGAK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-