Tvap015839.1
Basic Information
- Insect
- Trialeurodes vaporariorum
- Gene Symbol
- -
- Assembly
- GCA_011764245.1
- Location
- HIC:699677-709104[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00017 0.011 16.1 3.0 1 23 467 489 467 489 0.98 2 19 1.8e-05 0.0012 19.2 0.2 3 23 499 519 497 519 0.94 3 19 2.9e-05 0.002 18.5 2.7 1 23 525 547 525 547 0.98 4 19 1.6e-07 1.1e-05 25.6 0.9 1 23 553 575 553 575 0.98 5 19 0.00012 0.0084 16.5 0.7 1 23 581 603 581 603 0.98 6 19 1e-05 0.00068 20.0 0.2 1 23 609 631 609 631 0.94 7 19 1.7e-06 0.00012 22.4 2.5 1 23 637 659 637 659 0.98 8 19 9.2e-06 0.00062 20.1 1.3 2 23 666 687 665 687 0.91 9 19 3.1e-06 0.00021 21.6 0.9 1 23 693 715 693 715 0.98 10 19 4.8e-06 0.00033 21.0 0.2 1 23 721 743 721 743 0.95 11 19 2.6e-07 1.8e-05 24.9 1.2 1 23 749 771 749 771 0.98 12 19 2.9e-07 2e-05 24.8 0.5 1 23 777 799 777 799 0.98 13 19 2.6e-06 0.00017 21.8 0.1 1 23 805 827 805 827 0.97 14 19 1.7 1.1e+02 3.5 2.3 1 23 854 876 854 876 0.98 15 19 0.0028 0.19 12.3 0.4 1 23 914 936 914 936 0.95 16 19 6.2e-07 4.2e-05 23.8 0.8 1 23 942 964 942 964 0.99 17 19 2.1e-07 1.5e-05 25.2 1.9 1 23 970 992 970 992 0.97 18 19 0.0013 0.087 13.3 2.7 1 23 998 1020 998 1020 0.98 19 19 0.001 0.069 13.7 0.4 3 23 1028 1048 1027 1048 0.95
Sequence Information
- Coding Sequence
- GGCCAAATGGCTGGGTTGGGAATTTGGGATCCTCGGTCCATAATTTTTAAAAATTGAAGTTATTTGACTTATTCGCATATTAAGCTATTTGAATTTCCTAGTTTTCCCAAGCTGTTTCCCCCTTTTCAGCATGAGTTTATCATCTAGCTGTTTTTTGTTCTCTATGTCCAATCAAGTCACGCGATGGATGGGTTCCGCACCTCCTCAAGTTTAGTTTTATGAGTTGCTGTTCAAAAAGTACTCAATTTTACCTCACCGTGTTTTCTTTGAACTTATAATCTACAGGAAATGAATTTTCAATTCTATTTCAACTTCATAACTTTAAGCTAGTTTTTTCTCTACTATTGTTCAACATTTAGTCAGCTCAATGGCTGATGCGGCAATTGATCTATTTGTTGATAAGCCTCTCGGAAGAAAAATTTTTTGAGAGCCTGTCTGTATGATTCACTGTTTGGTGTATCAATTGTCTGTCTCACTTTTGTCGGAGTTACGTGGTTTCGAATGGTGAACCGCGGAATCTATCAGGGCATGCTGAAACCAGTGATGGATCAACTCAAGAATGAGAATCATCAGGGAGATAACAAGTATCTAATTCAAGATTTGAATCATCGAATTTATAATCGGTTACCGGAAAAATCAAGTCTTGACTTTTCTGCGCCAAGTGCTCTTATGAATCATGCGGAATCCTTGAACGTTTTAAATTTAGAGACTCTGTCCAAAATGATCGGTCCAGAAGCATCTCATCTAGCAACAGCTTTCCCGATGTTACCTTTTAAAACTAATCTACCATTCCCTGATAATCGTCCGGGGCCTCTCTCTTTTCCGGAAAATCGAAATGGAACTCATCCGTTTCTTGACAATCGAAACGGGACTCATCCCTTCTCAGAAAACCGCAGCAGCAGTCAACCTTTTCCTGCCAACCGAAATGGGGCTCATTCATTTCCAGATAACGGAAATCCTTCGTTTCATGAAAATCGTAATGGGACTCATCCTTTTCCAGAGAATCGCAGCATGAGTCATCCTTTCTCTAATAATAATCAAAACCGCAACACCCCCTTCCCTGAAAACCGTGACAGTAGTCGACCTTTCCGAGAAAGTCAGAACGGAGTTTCATCTGTAAGTGATTATTCCAATCATCCAGAACTCCTGCACTCACCCCGCACGGATCCTCCGTCTCGTGAAATACCTGCTCGGCGGGATTTCGATAACTTCAAAAATGAAAACACTAATCCATCAAATTTTTGTAGTATTGAACCGGAAGCAGTTTATTCCGACGATGAAGAACCGTCAAATCTCTCTGTGTATTCACACATTTTGCCCAGTTGTTCCGAACTTCCGCCACATTCACATGCTAACTGTCTTTCAAACTCCGAAAACAATGCTGAAGCTCTAAATCAGTTTCAGTGCAAGGTATGTAAGAAAGTCTTGGCTAACAAACATAACCTAAAAATGCACTCTCTAACACATTCCGGTGAAAATCGTGCAAAGTTGTTCTGCCCAACTTGCGGTAAGGGTTTCATCAAGCCATCAGATTTACGGCGGCACAAAGTTATTCACACTGGAGAGCGGCCTTATGCTTGTCACGAGTGTGATATGGCTTTTCATGATCCATCTACGCTTAAACAACATTCGAGAACACACTCAGGAGTCAAACCGTACTCGTGTAGTGAGTGCGGTCGAAGTTTTGCATCTAATTATTCATTACAGCGGCATATGTTTGTACACGCAGACAAAGCTCCTTTTACTTGTACAGAATGCGGTGTCGCTGTTGCTACCAAATACGATCTCAAAATACACCACATGAAGCATAACGGGAAACTTCCGTACCCTTGTTCAGTATGCAACAAAGGGTTCAGCAAACCGTCAGATCTCAACCGTCACAGCGTCATCCACACAGGCGAAAGACCTTATCATTGTGAAGTATGTAAAATGAGTTTCACAAATTCCAGTAATCTTAGGATGCACATATTGACACATTCAAAAGTGAAACCTCACCCTTGTATAACGTGTAACAAATCATTCCGAAGACCTTCAGAACTGGAAAGGCATTTGCTCACTCACAGTGGTGAGAGGCCTTACGTTTGTTCGATCTGCAACACAGCTTTCACCACAAGTTATAATTTGAAAGTTCACTCTATGAAACACTCCGGGGGACTTCCGTACCCTTGTCCCTCATGCGATAAAGCTTTCAGTAAGCCATCCGAGCTACAACGCCATAGTTTTGTTCATTCCGGTGAGAAACCGTTCTCTTGCCCCCAGTGTGACTTAAGTTTTACAAATTCTAGTAATTTACGGACTCATACGTTAACTCATTCAGGGAAAAGGCCATTCTCTTGTTCTGTTTGTGAGAAAGCATTCACGAGACCCTCGGACGTGAAGAGACATATGTTAACGCATACTGGTGCCCGTCCATTTGCCTGCAACCTTTGCGGTCTAGCTTTTGCGGATTCCTCTAATCTCAAAAAACACACTCTAATACATTTTAGATTAGATCCCTTAGCATTGGGCGAACAGTTCAAAAACTCTAACGAGAAAGAAAACCCAATCCATAAAGCGTCCTTTAAATGCTTTTTATGTTATTCTGAGTTTCAGTCTGCCCACGAACTTGATTTACATTCGATGACTCACGCAATCGACCAGGGGTACCAAAACAATTCTCCAGTTATTGCGTTGAAAGACGAACATAGTCAGTTTGCACTACAAGACAGTAAGCAACGATGCGCAGAGAATATGAAACAATATTCGTGTCCATCGTGTGGTATGCAGTTTGCTCACGCTTTACATTTACAGGAGCATGCTGTCGTTCATTTGAATGAACCGTCCTTCCAGTGCGAAATATGTGAGAAAACATTTATTCAGGAATCGTACCTTAAAAACCATCTTCTTACTCATACGGAGTCACGACCATATCGGTGCCCAGAATGCTCTAAAAGCTTTAAAAGCTCCTCTCACCTAAAAAATCACGTAGCGATACATTCGGGTGTAAAACCATTTGTTTGTACCATTTGCAGTAAATCATTTTTGAAGCATGCCTCTTTACGACGGCACTACGCTACGCATGAAAGAATGAATCCAGTTGCCTGTAATCTGTGCGGTAAAACGTTTTTAAACCAAGAATATCTTAAGAAGCACAGTATTATTCATGTAAATAAACCGCAGATACATGTCTGATACTTTTAGTAATTGTTGAATTGTTTGGTAACTTTAAATTCACTCAAGTGATTCTCCATACTCATCAATGATACCCACCTTTGTGCCTCAGCATTGAATTTTGAATCATGTAATGATACTGATATGTTTGTATCATTTGTTTCTCTGTAATTTTCTCTATTGTTTAAGTTTTTTTCTTTTTTTTTATGAATCTGTGAATCATGTAATGATACTGATATGTTTGAGTCATCTTATCACTTGTCATCGCCATTTCACGAAATTGAGATAATTGCATTTTTGTCATTAGTTATATGTATGAACGTACCCATTTTCTATCAACCGGAATCACTTTGTCGTTGGAAAATGAAGAAGAGTAATGTTTCCCTAAACCTTCAAGTTTGATTGCATGCAACTAAGTTTACGCTTTATACATTCCGCTTCATGTGCAGATAATATCTTTCAAGTGTCACATGAGATTAGGTGAATCTATCTATTTTTTATGGTAGCCTGTCCTAATTAATCAATTAAAGGCCTCCGGCAAAAACACTTCAACTGCAACTGTAATCCGTTTGCAGGTGTAACGTTTTTTGGGGGAACCTTTCAAATACTGATAAATTTGTCGAAAAACCAAGGACAAATTAAAATTTCAGCCAATTTTATCATCTCTTTCCTCCCCCTGATCGATGTTTTTTTGCAAATCAAAATTGTTCCCAAGAAGAGAGTCTGTTGTGATGAAATTTTAGAAGTCTAGGCAAA
- Protein Sequence
- GQMAGLGIWDPRSIIFKN*SYLTYSHIKLFEFPSFPKLFPPFQHEFII*LFFVLYVQSSHAMDGFRTSSSLVL*VAVQKVLNFTSPCFL*TYNLQEMNFQFYFNFITLS*FFLYYCSTFSQLNG*CGN*SIC**ASRKKNFLRACLYDSLFGVSIVCLTFVGVTWFRMVNRGIYQGMLKPVMDQLKNENHQGDNKYLIQDLNHRIYNRLPEKSSLDFSAPSALMNHAESLNVLNLETLSKMIGPEASHLATAFPMLPFKTNLPFPDNRPGPLSFPENRNGTHPFLDNRNGTHPFSENRSSSQPFPANRNGAHSFPDNGNPSFHENRNGTHPFPENRSMSHPFSNNNQNRNTPFPENRDSSRPFRESQNGVSSVSDYSNHPELLHSPRTDPPSREIPARRDFDNFKNENTNPSNFCSIEPEAVYSDDEEPSNLSVYSHILPSCSELPPHSHANCLSNSENNAEALNQFQCKVCKKVLANKHNLKMHSLTHSGENRAKLFCPTCGKGFIKPSDLRRHKVIHTGERPYACHECDMAFHDPSTLKQHSRTHSGVKPYSCSECGRSFASNYSLQRHMFVHADKAPFTCTECGVAVATKYDLKIHHMKHNGKLPYPCSVCNKGFSKPSDLNRHSVIHTGERPYHCEVCKMSFTNSSNLRMHILTHSKVKPHPCITCNKSFRRPSELERHLLTHSGERPYVCSICNTAFTTSYNLKVHSMKHSGGLPYPCPSCDKAFSKPSELQRHSFVHSGEKPFSCPQCDLSFTNSSNLRTHTLTHSGKRPFSCSVCEKAFTRPSDVKRHMLTHTGARPFACNLCGLAFADSSNLKKHTLIHFRLDPLALGEQFKNSNEKENPIHKASFKCFLCYSEFQSAHELDLHSMTHAIDQGYQNNSPVIALKDEHSQFALQDSKQRCAENMKQYSCPSCGMQFAHALHLQEHAVVHLNEPSFQCEICEKTFIQESYLKNHLLTHTESRPYRCPECSKSFKSSSHLKNHVAIHSGVKPFVCTICSKSFLKHASLRRHYATHERMNPVACNLCGKTFLNQEYLKKHSIIHVNKPQIHV*YF**LLNCLVTLNSLK*FSILINDTHLCASALNFESCNDTDMFVSFVSL*FSLLFKFFSFFL*ICESCNDTDMFESSYHLSSPFHEIEIIAFLSLVICMNVPIFYQPESLCRWKMKKSNVSLNLQV*LHATKFTLYTFRFMCR*YLSSVT*D*VNLSIFYGSLS*LIN*RPPAKTLQLQL*SVCRCNVFWGNLSNTDKFVEKPRTN*NFSQFYHLFPPPDRCFFANQNCSQEESLL**NFRSLGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -