Tvap012593.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trialeurodes vaporariorum
Gene Symbol
-
Assembly
GCA_011764245.1
Location
HIC:8058737-8060968[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 2.7e-05 0.0018 18.6 5.1 1 23 242 264 242 264 0.98
2 18 7.1e-07 4.8e-05 23.6 2.1 1 23 270 292 270 292 0.98
3 18 1.5e-05 0.001 19.4 1.6 1 23 298 320 298 320 0.98
4 18 1.2e-06 8e-05 22.9 1.9 1 23 327 349 327 349 0.98
5 18 0.0003 0.02 15.3 4.7 1 23 355 377 355 377 0.97
6 18 1.8e-06 0.00012 22.3 4.7 1 23 383 405 383 405 0.97
7 18 7e-06 0.00047 20.5 2.2 3 23 413 433 411 433 0.98
8 18 1.5e-05 0.001 19.4 1.6 1 23 439 461 439 461 0.98
9 18 6e-07 4.1e-05 23.8 1.6 1 23 468 490 468 490 0.98
10 18 4.9e-06 0.00033 21.0 2.8 1 23 496 518 496 518 0.98
11 18 1.5e-06 0.0001 22.5 4.4 2 23 525 546 524 546 0.96
12 18 1.5e-05 0.001 19.4 4.5 3 23 554 574 552 574 0.98
13 18 1.3e-06 8.5e-05 22.8 1.5 1 23 580 602 580 602 0.98
14 18 0.0084 0.57 10.8 9.5 1 23 608 630 608 630 0.98
15 18 5.8e-07 3.9e-05 23.9 3.5 1 23 636 658 636 658 0.98
16 18 6.9e-07 4.7e-05 23.6 3.6 1 23 664 686 664 686 0.98
17 18 7.5e-08 5.1e-06 26.7 3.9 1 23 692 714 692 714 0.99
18 18 5.2e-07 3.5e-05 24.0 4.8 1 23 720 742 720 742 0.98

Sequence Information

Coding Sequence
ATGAATCCGGGGGCAGCAGACATTGATCAGGAGATGTTTTGTCCCGATTTGATGTCTCTCTCTCATCCCCCCAAAGAAAATGTTGTGAAAAAATATATTATTTTTAACGCTGGGATTGCAAATAATGATGAGACCCTTATCATGAAGGAAGAAGACATAGAAGCATGGTTTGGGAAGAAAGTGAAAATAGTTTTGGAAAGAGTGCACGAGGCAAAAAGGGAGAACGCAGAAACTCATCATGATAACTTTTGGAGTTACAGAAATCATTTTGAATCAGCTGCACCTGCCTCTGAGAATGAAATTTTGGACAATAGAATAAAAATAGAGAACCTCACCTGTGATGACGACGCTGGAGAATTATCCGAATTTAACTATCCAATAACAGATGCTTTCACTTGCCCAAAAGAAAGAGACAGCAAAGATATTGAATTGAACAATATACAGTTTATATCCACGAGTGTTAAGTTAGAACCGTTTGAAGATGACTGTGGATCACTGCTTGAGACCATTAGTGAAAGTTTAACAAACTTGCCGTGTAAGCACGAAGACTGTACATTCCCTGGAAAATGGGAAAACAATAGCTTAAGAAGTCTATCTCAACCTGATACTAACCAGGTTTTGTACGGACCAATAAAATTGGAAACTGTTAATATGAAAGCGCATGCCGTTAGAGATCCGTTGGAACTGGAGAAAGAGATCCAGGTACATACTGAGAAAAAACACTTTAAATGTACCCATTGCAGCAAGAAATTTTCTGTAAAAAGCAGGCTGACAAAACACTTACTGGTGCATACTGGAGAAAATCCCTTTGAATGCACCATTTGCAACAAAAAGTTTTCTGAAAAATTCAATTGGACGAGACACATCCGGATGCATACTGGGGAAAAACCCTTTAGATGCACTCTTTGCAAAGAAAAGTTTTCTTCAAAAGTTACTTTGACTAATCATGCCCGGGTGCATACTGGGGGAAAAAAACCCTTTGAATGCACCGTTTGCAACAAAAAGTTTTCTGAAAAATACAGTTGGACTAGACACATCCGGATGCATACTGGGGAAAAACCATTTGAATGCGCCCATTGCTGTAAAAAATTTTCACGCAAAAGTGATTTGACTATACACATCCAGGAGCACACCGGAGAAAAACCCTTTGATTGCACCCATTGCAGCAAGAAATTTTCTACGAAAAGCCTTTTGACTAAACACTTGCGGGCGCATACTGGGGAAAAACCCTTTGGATGCACCTATTGCAACAAAAAGTTTTCTGAAAAATTCAATTGGACGAGACACATCCGGATGCATACTGGGGAAAAACCCTTTAGATGCACTCTTTGCAAAGAAAAGTTTTCTTCAAAAGTTACTTTGACTAATCATGCCCGGGTGCATACTGGGGAAAAAAAACCCTTTGAATGCGCCCATTGCAGCAAAAACTTTGCGCAAAAAAGCGATTTGACCATACATATCCGGTCGCACACTGGAGAAAAACCCTTTGTTTGCACCCAATGTAGCAAAACTTTTTCTATGAAAACTACTTTGACTAGACACTTAAGGTTGCACACTGGAGAAAAATCCTGTGTTTGCACCCATTGCAACAAAAAATTTTCTGATAAAAGTGCTTTGACTAACCACATCCAGGTGCATACTGGGGTAAAACCCTTTGGATGCACCCATTGTAACAAAAAGTTTTCTGAAAAATACAGTTTGACTAGACACACTCGGATTCATACTGGGGAAAAAATCTTTGAATGTGCCCATTGCAACAAAAAATTTTCTGATAAAACTGCTTTGACTATACACGTGCGCGTGCATACTGGAGAAAAACCCTTTGTTTGCACCCATTGCTGCAAGACATTTTCTATGAAATGCAATTTGACTAAACACTTACGGGCGCATACTGGGGAAAAACCCTTTGAATGCACCCATTGCAAAAAAAAGTTTTCTGATAAAAGTGCTTTGTCGAATCACATCCGGTTGCATACTGGGGAAAAACCTTTTAAATGCACCCATTGCAGCAAAAAGTTTTCTGATAGAAGTGCTTTAACTAAGCACATCCAGGCACATACTGGGGAAAAACCCTTCAAATGCACCCATTGCAGCAAGTCATTTTCAGACAAAAGCTATTTGACAATACACATTCGGGTTCACACCAGAGAAAAACCCTTTGTTTGCACCCATTGCAGCAAGAAATTTTCTATGAAAAGCAATTTGACTAAACACTTGCGGGTGCATACTTGA
Protein Sequence
MNPGAADIDQEMFCPDLMSLSHPPKENVVKKYIIFNAGIANNDETLIMKEEDIEAWFGKKVKIVLERVHEAKRENAETHHDNFWSYRNHFESAAPASENEILDNRIKIENLTCDDDAGELSEFNYPITDAFTCPKERDSKDIELNNIQFISTSVKLEPFEDDCGSLLETISESLTNLPCKHEDCTFPGKWENNSLRSLSQPDTNQVLYGPIKLETVNMKAHAVRDPLELEKEIQVHTEKKHFKCTHCSKKFSVKSRLTKHLLVHTGENPFECTICNKKFSEKFNWTRHIRMHTGEKPFRCTLCKEKFSSKVTLTNHARVHTGGKKPFECTVCNKKFSEKYSWTRHIRMHTGEKPFECAHCCKKFSRKSDLTIHIQEHTGEKPFDCTHCSKKFSTKSLLTKHLRAHTGEKPFGCTYCNKKFSEKFNWTRHIRMHTGEKPFRCTLCKEKFSSKVTLTNHARVHTGEKKPFECAHCSKNFAQKSDLTIHIRSHTGEKPFVCTQCSKTFSMKTTLTRHLRLHTGEKSCVCTHCNKKFSDKSALTNHIQVHTGVKPFGCTHCNKKFSEKYSLTRHTRIHTGEKIFECAHCNKKFSDKTALTIHVRVHTGEKPFVCTHCCKTFSMKCNLTKHLRAHTGEKPFECTHCKKKFSDKSALSNHIRLHTGEKPFKCTHCSKKFSDRSALTKHIQAHTGEKPFKCTHCSKSFSDKSYLTIHIRVHTREKPFVCTHCSKKFSMKSNLTKHLRVHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01478319;
90% Identity
iTF_01478319;
80% Identity
iTF_01478319;