Tvap011621.1
Basic Information
- Insect
- Trialeurodes vaporariorum
- Gene Symbol
- -
- Assembly
- GCA_011764245.1
- Location
- HIC:18449245-18455113[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.00045 0.03 14.8 0.1 1 23 338 360 338 360 0.98 2 31 0.00086 0.058 13.9 1.8 1 22 366 387 366 387 0.94 3 31 0.015 1 10.0 6.3 1 23 394 416 394 417 0.93 4 31 0.0034 0.23 12.0 3.1 1 23 421 443 421 443 0.98 5 31 6.5e-07 4.4e-05 23.7 2.2 1 23 449 471 449 471 0.99 6 31 0.00082 0.056 14.0 4.0 1 23 477 499 477 499 0.98 7 31 0.0008 0.054 14.0 1.8 1 23 505 527 505 527 0.98 8 31 2.8e-05 0.0019 18.6 5.1 1 23 533 555 533 555 0.98 9 31 0.00036 0.024 15.1 5.5 1 23 561 583 561 583 0.98 10 31 2.1e-05 0.0014 19.0 0.3 1 22 589 610 589 613 0.92 11 31 5.7e-05 0.0038 17.6 0.1 1 23 647 669 647 669 0.98 12 31 0.0013 0.09 13.3 2.6 1 22 675 696 675 696 0.94 13 31 0.015 1 10.0 6.3 1 23 703 725 703 726 0.93 14 31 0.0034 0.23 12.0 3.1 1 23 734 756 734 756 0.98 15 31 6.5e-07 4.4e-05 23.7 2.2 1 23 762 784 762 784 0.99 16 31 0.00082 0.056 14.0 4.0 1 23 790 812 790 812 0.98 17 31 0.00047 0.032 14.7 1.1 1 23 818 840 818 840 0.98 18 31 2.8e-05 0.0019 18.6 5.1 1 23 846 868 846 868 0.98 19 31 0.00036 0.024 15.1 5.5 1 23 874 896 874 896 0.98 20 31 2e-06 0.00014 22.2 0.6 1 23 902 924 902 924 0.98 21 31 8.4 5.7e+02 1.3 0.1 15 23 927 935 925 935 0.90 22 31 0.00057 0.039 14.4 4.2 1 23 941 963 941 963 0.98 23 31 2e-06 0.00013 22.2 1.0 1 23 969 991 969 991 0.98 24 31 7.3e-07 4.9e-05 23.6 0.4 1 23 997 1019 997 1019 0.98 25 31 0.012 0.83 10.3 1.3 3 23 1027 1047 1025 1047 0.97 26 31 0.0011 0.076 13.5 4.2 1 23 1053 1076 1053 1076 0.97 27 31 0.016 1.1 9.9 0.0 1 23 1176 1198 1176 1198 0.98 28 31 6.2e-05 0.0042 17.5 0.4 1 23 1204 1226 1204 1226 0.98 29 31 0.00036 0.025 15.1 0.8 1 23 1232 1254 1232 1254 0.98 30 31 0.00013 0.0089 16.5 2.7 1 23 1260 1282 1260 1282 0.98 31 31 0.0011 0.078 13.5 2.2 1 23 1288 1310 1288 1310 0.98
Sequence Information
- Coding Sequence
- ATGAAACGATCCAAGAAAATCAAAACAATGGTTGGTAATATTGATTCTACTAAATTAAATCATGGAGAAAATACTGATACAGTCGAAAGAAAGCAGATAGTTGAATCTCCACTTTTGAGCGATGAAAATTCTCCCATTCATACTTTCTCAGTGCCTGTCTCATATGAACGTCTCACAATTCCTCCTAGGGCTGAAATTTTTGATCTAGGGGAATACGGTCATGAGTCAAAGTACCTCAATCATCCTACCACACGCAATGTTTTACAAAATCATGTTGGAAATAATGTATGTAAAGCAGGTCAAGGCCCGGCTGTTAGGATACATGAAGATAAAGTGAATGCATCGTTTGGGAAAGAGCTGAGAAATGTTTCGGAAAGGGTGGATAAGGCAAAAGAAGAAATATCAGTCAACAAAAGGAGATTTGAATCAGAATTTTACAATGATGCCCTCAACAATAACATTAGAAATTATCATACTGCCTCGATTGAGTCTGAATCTTCATACGATAATGATCATATTATTACAACATTTAAAAGGGAGAGTAATCTCCCTTGTGATAAGGATATTGGAGAAGTTTCCGAATTTGAACATCCAACCAGGAATACTTTTGCAGAAGAGGAAGCATCAGATGTCAAAAACATTGCCTTTACAAATACTCAGTTCTTATCAGCAAGTGGAAAATTGAATGAACAGGAAGCAATGCCTGAGTCATTCAGTGGTAATCATGCAAGCTTGGTAACAGAACAGGAAGGTTACACATTCTTGAACTGGAAAGAAAACAGGGCTATAGGGAATCGGTCACATCATGAAATCTCTCATTGCGACTTGGATGGACCAATTAAATCAGAGATCAGTCATTTTTCTCGGGATAATTGTGATGATCTGCCACATCTCAGCCAGGAAATCATTCATAAACAATTGAATGAAAGAAGTATAGAAGATAAACAACATGTTTGCTCAGGCAACCCTACAAAGTTAAGTCACAAGTCAACTCACTCTGAAAACAGACAATTTTCCTGTTCAGATTGTCCAGCCGAATTTTCTTCAGAAGTTGCACTAAACCTTCATGTGAAGAAACATGTCAATGATAAACTCTACATTTGTTCCTGCTGTAATAAAGGCTTTTCTAGTAAGACTGCTCTTAATAGACACATCAAAACATGTGTGGGAGAAAAACCGTTTGAATGCATTCATTGCAAAGCAAAATTCTCTTTCAAATCATCTTTGAACAGACACTTTAGGGTACACCATTTGAAACCATTTGAATGCAAGCAATGCAATGCAAAATTTTCTCGCAAAAGAATTTTGATTCATCACTTGAGGTTACATACAGGTGAAAAGCCCTATGAGTGCAAGCATTGCAATGCTAAATTTGCTCGCAAGGGAAATTTGAAAACTCACATCAGGATACATACAGGTGAAAAACGATTTGAATGCACTCATTGCAAAGCAAAATTCCTGCGCAAAGAAACTTTGAAGAGACACTTAAGGATACATACAGGTGAAAAACCCTATGAGTGCAAGCACTGCAATGCTAAATTTGCTAACCAAACAACTTTGATATTTCACATCAGGATACATACAGGTGAAAAACCATTTGAATGCACTCATTGCAAAGCAAAATTCTCTCGCAAAGAATCTTTGAAAAGACACTTTAGGGTACACTCGGGTGAAAAACCATTTGAATGCAATGATTGCCATGTAAAATTTTCCCACAAAGCAAATTTGATGTTTCACATGAGGAGACATACGGGTGAAATACCATTTGAATGCAAATACTGCAATGAAATATTTGCTCACGAAGCAAATTTAAAGGATCACATTAGGGAAATCATTCATAAACAATTGAATGAAAGAAGTATAGAAGATAAACAACATGTTTGCTCAGGCAACCCTACAAAGTTAAGTCACAAGTCAACTCACTCTGAAAACAGACAATTTTCCTGTTCAGATTGTCCAGCCGAATTTTCTTCAGAAGTTGCACTAAACCTTCATATGAAGAAACATGTCAATGATAAACTCTACATTTGTTCCTGCTGTAATAAAGGCTTTTCTAGTAAGACTACTCTTAATAGACACATCAAAACATGTATGGGAGAAAAACCGTTTGAATGCATTCATTGCAAAGCAAAATTCTCTTTCAAATCATCTTTGAACAGACACTTTAGGGTACACCATTTGAAACCATTTGAAAAACCATTTGAATGCAAGCAATGCAATGCAAAATTTTCTCGCAAAAGAATTTTGATTCATCACTTGAGGTTACATACAGGTGAAAAGCCCTATGAGTGCAAGCATTGCAATGCTAAATTTGCTCGCAAGGGAAATTTGAAAACTCACATCAGGATACATACAGGTGAAAAACGATTTGAATGCACTCATTGCAAAGCAAAATTCCTGCGCAAAGAAACTTTGAAGAGACACTTAAGGATACATACAGGTGAAAAACCCTATGAGTGCAAGCACTGCAATGCTAAATTTGCTAACCAAGCAACTTTGATATTTCACATCAGGATACATACAGGTGAAAAACCATTTGAATGCACTCATTGCAAAGCAAAATTCTCTCGCAAAGAATCTTTGAAAAGACACTTTAGGGTACACTCGGGTGAAAAACCATTTGAATGCAATGATTGCCATGTAAAATTTTCCCACAAAGCAAATTTGATGTTTCACATGAGGAGACATACGGGTGAAATACCATTTGAATGCAAATACTGCAATGAAATATTTGCTCACGAAGCAAATTTAAAGGATCACATTAGGGTACATACAGGAGATCTGAAAACTCACATCAGGATACATACAGGTGAAAAACGATTTGAATGCACTCATTGCAAAGTAAAATTAACTCGCAAAGCATCTTTGAAAAGACACTTTAGGGTACACTCGGGTGAAAAACCATTTGAATGCAATGATTGCCATGTAAAATTTTCCCTCAAAGCAAATTTGATGGCTCACATGAGGATACATAAGGGTGAAAAACCATTTGAATGCAATTACTGCAATGCAAAATTTGCTCAGAAAGCAAATTTAAAGGATCACATTAGGGTACATACAGGTGAAAAACCCTATGGGTGCAAGCATTGCAGTGCAAAATTTGCTCTCGAAGGAAATTTGAAAACTCACAGCAGGATACATACGGGTGAAAAACCATTTGAATGCACTCATTGCAAAGCAAAATTCTCTTTCAAAGTGTTTTTGAACAGACACTTAAAGATACAACATTGCAGTGCGAAATTTTGGGATACTGATTCAGTCAGAAGAAAGCAGATAGTTGAATCCCCACTTTTGAGAGATGAAAATTCTCCCATTCATACTTATTCAGTGGCTGTCACATGTGAACGTCCCACAGTTCCTTCCAGGACTGAAATTTTTGATCTGGGGGAATACGATCATGAGTCAAAGTACCTCAATCCTCCTACCACACACAATGTTTCACAAAATCATGTCGGAAATAATGTAGGTAAAGCAGTCCAAGACTATACTGTTATATTACATAAAGATAAATCTAAAAATATACGATTTTCCTGTGCAGATTGTCCAGTCAAATTATCCCCAGAAGTTGCACTAAACGTTCATATGAATAAACACGTCAACGGTAAACTCTACATTTGTTCTTACTGCAATAAAGGCGTTTTTAGTAAGACTGCTCTTATTAGACACATCATGACACATACAGGTGAAAGACCATTTGAATGCAATTACTGCAATGCAAAATTTGCTCTTAAAGGAACTTTAAAGGATCATTTTAGGGTACATACAGGTGAAAAACCTTATGAGTGCAAGCATTGCAGTGCAAAATTTGCTCGCAAAGCAACTTTGAAGGACCACTTTAGGGTACATACAGGCGAAAAACCATTTGAATGCACTCATTGCTATGCAAAATTTGCTTCTAACAGATCTTTGTACAATCATTTAATGATACATGAGGGTGAGAAACCCTATGAATGA
- Protein Sequence
- MKRSKKIKTMVGNIDSTKLNHGENTDTVERKQIVESPLLSDENSPIHTFSVPVSYERLTIPPRAEIFDLGEYGHESKYLNHPTTRNVLQNHVGNNVCKAGQGPAVRIHEDKVNASFGKELRNVSERVDKAKEEISVNKRRFESEFYNDALNNNIRNYHTASIESESSYDNDHIITTFKRESNLPCDKDIGEVSEFEHPTRNTFAEEEASDVKNIAFTNTQFLSASGKLNEQEAMPESFSGNHASLVTEQEGYTFLNWKENRAIGNRSHHEISHCDLDGPIKSEISHFSRDNCDDLPHLSQEIIHKQLNERSIEDKQHVCSGNPTKLSHKSTHSENRQFSCSDCPAEFSSEVALNLHVKKHVNDKLYICSCCNKGFSSKTALNRHIKTCVGEKPFECIHCKAKFSFKSSLNRHFRVHHLKPFECKQCNAKFSRKRILIHHLRLHTGEKPYECKHCNAKFARKGNLKTHIRIHTGEKRFECTHCKAKFLRKETLKRHLRIHTGEKPYECKHCNAKFANQTTLIFHIRIHTGEKPFECTHCKAKFSRKESLKRHFRVHSGEKPFECNDCHVKFSHKANLMFHMRRHTGEIPFECKYCNEIFAHEANLKDHIREIIHKQLNERSIEDKQHVCSGNPTKLSHKSTHSENRQFSCSDCPAEFSSEVALNLHMKKHVNDKLYICSCCNKGFSSKTTLNRHIKTCMGEKPFECIHCKAKFSFKSSLNRHFRVHHLKPFEKPFECKQCNAKFSRKRILIHHLRLHTGEKPYECKHCNAKFARKGNLKTHIRIHTGEKRFECTHCKAKFLRKETLKRHLRIHTGEKPYECKHCNAKFANQATLIFHIRIHTGEKPFECTHCKAKFSRKESLKRHFRVHSGEKPFECNDCHVKFSHKANLMFHMRRHTGEIPFECKYCNEIFAHEANLKDHIRVHTGDLKTHIRIHTGEKRFECTHCKVKLTRKASLKRHFRVHSGEKPFECNDCHVKFSLKANLMAHMRIHKGEKPFECNYCNAKFAQKANLKDHIRVHTGEKPYGCKHCSAKFALEGNLKTHSRIHTGEKPFECTHCKAKFSFKVFLNRHLKIQHCSAKFWDTDSVRRKQIVESPLLRDENSPIHTYSVAVTCERPTVPSRTEIFDLGEYDHESKYLNPPTTHNVSQNHVGNNVGKAVQDYTVILHKDKSKNIRFSCADCPVKLSPEVALNVHMNKHVNGKLYICSYCNKGVFSKTALIRHIMTHTGERPFECNYCNAKFALKGTLKDHFRVHTGEKPYECKHCSAKFARKATLKDHFRVHTGEKPFECTHCYAKFASNRSLYNHLMIHEGEKPYE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -