Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.016 8.7 6.5 1.8 14 36 107 126 100 132 0.74

2 6 0.0026 1.4 9.0 3.5 5 41 127 159 125 161 0.89

3 6 0.0015 0.81 9.8 1.7 18 41 167 187 162 189 0.89

4 6 0.0023 1.3 9.1 1.7 17 41 194 215 189 217 0.77

5 6 0.064 35 4.5 2.4 17 41 222 243 216 245 0.81

6 6 0.0039 2.1 8.4 1.9 14 41 247 271 239 273 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.016	8.7	6.5	1.8	14	36	107	126	100	132	0.74
2	6	0.0026	1.4	9.0	3.5	5	41	127	159	125	161	0.89
3	6	0.0015	0.81	9.8	1.7	18	41	167	187	162	189	0.89
4	6	0.0023	1.3	9.1	1.7	17	41	194	215	189	217	0.77
5	6	0.064	35	4.5	2.4	17	41	222	243	216	245	0.81
6	6	0.0039	2.1	8.4	1.9	14	41	247	271	239	273	0.82

Coding Sequence: ATGAACGACTCTGATGGTACAAACTTCACATCAATCTGTTTAAATGGAAAACAGCAAAGCGAATTGCATGAACTTGGACCAATAAACAAAGTAAACGTTTCCAACAATGTAAGTACATCACAACAAGAGGGAAATAGAAAAACTGGAACAGAACTAATTTCATCTCCTTTCGACACTGCAGGACTTGCTAAAAGAGTACAACTCAGTTCTCCTATCAGGACACATTCTGGAAAAAAAAATGAATGCATGGGCCGACTGCAATCCCAAAATTTTTCTGGAAAAGGGTCTTTGCGTAATCACATCATGACTACTAGAGGTGAAAAACTTTTTGAATGTGTCCATTGTAATTCAACATTTTCTAAAAAGGGAACTTTGAGAAATCACGTTAGTACACATTCTAGTGAAAAACGTTTACAATGTTCTCAATGCAATGCCAAATTCACTCAAAGTTCTAAGTTGAGAAGTCACATGAGGACTCACAACGGTGAAAAACCTTTTCAATGTACGTACTGCCATTCAAGATTTTCTGATAAAGGAAATTTGAAACGTCACATCAGGACTCACACTGGTGAAAAACCTTTTCAATGTGCTCACTGCAATGCGAAATTCACTCAAAATTCTAGTTTGAGTAGTCACATGAGGACTCACACTGGTGAAAAACCTTTTCAATGTACTCACTGCAATGCAAAATTCCCTTCGAAATCCCACCTTCAATCTCATATCAGGACTCATACTGGTGAAAAACCTTTTCAATGTTCTCACTGCAATGCAAAATTCCCTGCAAGTTCTAGTTTGAGAAGTCACATCAGGACTCACATGGTGAAAAACCTTTTCAATGTTCTCAATGCAATGTGA
Protein Sequence: MNDSDGTNFTSICLNGKQQSELHELGPINKVNVSNNVSTSQQEGNRKTGTELISSPFDTAGLAKRVQLSSPIRTHSGKKNECMGRLQSQNFSGKGSLRNHIMTTRGEKLFECVHCNSTFSKKGTLRNHVSTHSSEKRLQCSQCNAKFTQSSKLRSHMRTHNGEKPFQCTYCHSRFSDKGNLKRHIRTHTGEKPFQCAHCNAKFTQNSSLSSHMRTHTGEKPFQCTHCNAKFPSKSHLQSHIRTHTGEKPFQCSHCNAKFPASSSLRSHIRTHMVKNLFNVLNAM

Sequence clustering based on sequence similarity using MMseqs2