Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.83 4.6e+02 1.0 0.2 33 40 6 13 3 16 0.86

2 10 1.1 6.2e+02 0.5 2.3 18 29 22 33 7 44 0.69

3 10 0.0001 0.057 13.5 1.8 13 40 45 69 36 72 0.83

4 10 0.0091 5 7.2 1.6 6 41 67 98 66 100 0.83

5 10 0.19 1.1e+02 3.0 0.4 17 28 105 116 99 127 0.80

6 10 0.0019 1 9.4 2.8 18 41 134 154 123 155 0.91

7 10 0.24 1.3e+02 2.7 0.2 19 39 163 180 158 184 0.81

8 10 1.2e-05 0.0068 16.4 1.2 16 41 188 210 179 212 0.85

9 10 0.76 4.2e+02 1.1 3.1 18 41 218 238 210 240 0.81

10 10 0.047 26 5.0 1.0 17 41 245 266 238 267 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.83	4.6e+02	1.0	0.2	33	40	6	13	3	16	0.86
2	10	1.1	6.2e+02	0.5	2.3	18	29	22	33	7	44	0.69
3	10	0.0001	0.057	13.5	1.8	13	40	45	69	36	72	0.83
4	10	0.0091	5	7.2	1.6	6	41	67	98	66	100	0.83
5	10	0.19	1.1e+02	3.0	0.4	17	28	105	116	99	127	0.80
6	10	0.0019	1	9.4	2.8	18	41	134	154	123	155	0.91
7	10	0.24	1.3e+02	2.7	0.2	19	39	163	180	158	184	0.81
8	10	1.2e-05	0.0068	16.4	1.2	16	41	188	210	179	212	0.85
9	10	0.76	4.2e+02	1.1	3.1	18	41	218	238	210	240	0.81
10	10	0.047	26	5.0	1.0	17	41	245	266	238	267	0.86

Coding Sequence: ATGTTTTCTGATAAGACCAATCTGAAACAACACATCAGGATGCATACTGGGGAAAGACCTTTTTTATGCAGTTACTGTCCTGCTACTTTTTCTCAAAATGGCTCGCTGAGAAAACACATCTTGACGCATACTGGTGAAAAATCGTTTGAATGTACTTTTTGCCATGCTACATTTTCTGGTAGTAGTAGTCTGAGAAAACACATCAGGATACATACCGGTGAAAAACCTTACGAATGCAGTTTATGCAGCGCCTCATTTTCTGATAAAGGCAATTTGAGAAGACACATTCGGTCCCATACCGGTGAAAAGCCCTTTGAATGTAGCCATTGCAAAGCTTCATTCTCTGATGCAAGCTCACTTAGAGTACACACCAGGATACATACTGGTGTAAAACCCTTTCAATGTAGTTATTGCCACTATAAATTTTCTGACAAAAGCAATTTGGAACACCACATCAGGACGCATACTGGGGAAAAACCTTTTTTATGCAGTTACTGTCCTGCTACTTTTTCTCTAAATGGCACTCTGAGAAGACACATCTTGACGCATACTGGTGAAAAACCCTTTGAATGTACTTTTTGCCAAGCTACATTTTCTGGTAGTAGCAATCTGAGAAGACATATTAGGAAACATACGGGTGAAAAACCTTACGAATGCAGTTTATGCAGCGCCTCATTTGCTGATAATTGCAATCTGAGGAGACACATCAGGACGCATACAGGTGAAAAACCCTTTGAATGTAGCCATTGCAGTGTTTCATTTGCTGATCAAAGCACACTGAAAAGACACATGAAGACGCATAGTGGTGTAAAACCCATTCAATGA
Protein Sequence: MFSDKTNLKQHIRMHTGERPFLCSYCPATFSQNGSLRKHILTHTGEKSFECTFCHATFSGSSSLRKHIRIHTGEKPYECSLCSASFSDKGNLRRHIRSHTGEKPFECSHCKASFSDASSLRVHTRIHTGVKPFQCSYCHYKFSDKSNLEHHIRTHTGEKPFLCSYCPATFSLNGTLRRHILTHTGEKPFECTFCQATFSGSSNLRRHIRKHTGEKPYECSLCSASFADNCNLRRHIRTHTGEKPFECSHCSVSFADQSTLKRHMKTHSGVKPIQ

Sequence clustering based on sequence similarity using MMseqs2