Tvap010935.1
Basic Information
- Insect
- Trialeurodes vaporariorum
- Gene Symbol
- -
- Assembly
- GCA_011764245.1
- Location
- HIC:44906927-44916217[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.3 1.5e+03 -1.0 0.0 29 38 57 66 57 69 0.86 2 3 8.4e-13 5.5e-10 38.8 0.1 2 37 101 136 100 142 0.90 3 3 3.3e-10 2.1e-07 30.5 0.1 4 36 161 193 160 197 0.94
Sequence Information
- Coding Sequence
- ATGAAACTTCTTGTCTTGCAAACTATTTTAGGCCTTCGTGTTAATTTTCTTTTTCGAGCTGTAAGTTTCAAACTTTTCAATCTTGCAGCCTTTGAAAACGTATTTTATTTATCTAGTGACTGGGATGGAGAGCGATTTGAGTGCGATCTTTGTCAAAAATCTTACAAGAACAAAACAACCCTTAATCGGCACGTCAAATATGAATGTAAATACGTTGCAGAAAAACCCAACTTTCCCTATTGGCCGTATCTAGTTGATTCAAGTTCGGGCAGATTTATCGTAAGGCGACAACGGTGGGACAGAGAAATGATGAAAGAAGCTGTGATCGCAGTGAGGGAGAAGCGACTAGGATTGAAGAAAGCAGCGACGCTGTATTCAGTTCCAAAGACCACTTTGCAGCGCTACGTTCACAACACTCAGTATTCGCCTGATGACATTGTTAAGAAGAAGTTAGGGAAAAGACAATCTTGGGATATCCAGTCCATGGTTAAAGCGGTAGTCGCAGTGCGAGAGAAAAGAATGCCGCTGGAAAAAGCTGCGAAACAATTCTCCGTTCCAAAGTCAACGTTACAGCGTTATTCCTACAGCATGGTATATTCACCAGAAGATATGGTCATCCCACAGCTTGGAACTGGGCTGCATGCAGACTACGGCAGCTTAAACCCCGAACAAGTAATGAAAGTAGAGACCCCAGAATTTATGGTTTATTCACAAGAAGATATTGTCATCCCACAGCTTGAAAGTGGAATGCATGGAAACTGCGCTAGCTTGAACCCCGAACAAGTAATTAAGGTAGAGACCCCGGCATAA
- Protein Sequence
- MKLLVLQTILGLRVNFLFRAVSFKLFNLAAFENVFYLSSDWDGERFECDLCQKSYKNKTTLNRHVKYECKYVAEKPNFPYWPYLVDSSSGRFIVRRQRWDREMMKEAVIAVREKRLGLKKAATLYSVPKTTLQRYVHNTQYSPDDIVKKKLGKRQSWDIQSMVKAVVAVREKRMPLEKAAKQFSVPKSTLQRYSYSMVYSPEDMVIPQLGTGLHADYGSLNPEQVMKVETPEFMVYSQEDIVIPQLESGMHGNCASLNPEQVIKVETPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -