Basic Information

Insect: Trachymyrmex zeteki
Gene Symbol: -
Assembly: GCA_001594055.1
Location: NW:1493311-1496174[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.038 2.5 8.0 1.3 1 23 158 181 158 181 0.97

2 10 2.5 1.7e+02 2.3 4.8 1 23 203 226 203 226 0.90

3 10 0.61 40 4.2 0.3 2 23 293 316 292 316 0.93

4 10 0.071 4.7 7.2 0.8 1 23 356 379 356 379 0.96

5 10 4.9e-08 3.2e-06 26.6 2.8 1 23 385 407 385 407 0.98

6 10 2.3e-05 0.0015 18.2 1.7 2 23 423 445 422 445 0.94

7 10 4.5e-05 0.0029 17.3 0.4 1 23 451 473 451 473 0.98

8 10 0.00041 0.027 14.2 1.7 1 23 479 501 479 501 0.97

9 10 0.0002 0.013 15.2 3.2 1 23 507 530 507 530 0.98

10 10 0.078 5.1 7.1 0.4 1 23 537 559 537 559 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.038	2.5	8.0	1.3	1	23	158	181	158	181	0.97
2	10	2.5	1.7e+02	2.3	4.8	1	23	203	226	203	226	0.90
3	10	0.61	40	4.2	0.3	2	23	293	316	292	316	0.93
4	10	0.071	4.7	7.2	0.8	1	23	356	379	356	379	0.96
5	10	4.9e-08	3.2e-06	26.6	2.8	1	23	385	407	385	407	0.98
6	10	2.3e-05	0.0015	18.2	1.7	2	23	423	445	422	445	0.94
7	10	4.5e-05	0.0029	17.3	0.4	1	23	451	473	451	473	0.98
8	10	0.00041	0.027	14.2	1.7	1	23	479	501	479	501	0.97
9	10	0.0002	0.013	15.2	3.2	1	23	507	530	507	530	0.98
10	10	0.078	5.1	7.1	0.4	1	23	537	559	537	559	0.93

Sequence Information

Coding Sequence: ATGAGTGAAGAAATGAATGACATGTCCTACTTAAGCTATGACATAAATGGCACAAGGTACATTTATAAACTTGCACTATCACCAATGGACATTATGAAGAATTCAGCAGTGAGTGAAGAACAAACTACAGTTGACATTGTTAAGGGAAGTGAGTTGGACAGTGGAGAAGAACCGATTTCGTTAGTGTGTTTGAATGGACAGGTATATGCGATTAAAAATGGAGTGATTGAAGAAGTGAGTACCAACTTGCAACCTGTAGAACAAATGAGTTGTAACGAAAAGGCACTCTCGATGTCAAAGAATacggaaaataatgaaaatggtTATATCAAGAATGAAAATGTAGTAATCGAAAGTCCATACAGACAATCTGAGGAGCAATACGAAGTCGCTACAGAGGAAGTAGTGAAAGATCTTGTTGCGCAAGATGACAACGTTAACGTCGATGATTTCTTAGAAGTTGTGACTGCTTTTAAATGCAAGATGTGTACTTACCTATCTCAAGACAAGATGCAATTATTAGATCACATTCAGAAACTACATTTAAATTCTGCTATAGATATTACAccaAAGGAAGAATCTAAAATGGATGaagtaaaaatagtttatatgtGTGCGGAGTGTTCCATCTGCTTCCATTCTTTTGAGGACTGTAAAGAACACATGATTAATGATCATCAATTAACAGACATTGCGAGTGATGAGGctggaaaagaaaatttgacaGATCTAGCGAATCCTGGCTTGGTAACTGAACATGAGGCTCAACATATCGAAAGCAATGAAGCAGAAAAAGATCCAGTAAAAATTTCGAAGACCTTAAATTCAGAATATATGCGTAATAGGAAAATGATAGAGTCAGCGGAAAGAAATGTGAAGTGTACGTATCAGGGCTGCCAGTACAAATTCGTCTCGGAAGAAATTATGCAGCAACATATTCTTTACCATACAGAATCTGAAACTGCAACAACATTTAAATGCACCATATGTCGAGATGTGAAGTTTACGAAGTGGCGCCAATGTAACTTGCATTTATGGAAGAAGCACCAAATTgACATAGGCTTGTTTACTTGCAAAATTTGTAAAGTCTACAAAAGTGCTACCATGGTAAAACTCTTGACGCACATGAGAGTACACAGTGACACTCGTGATTACAAATGTCCCGATTGcgagaaatgtttcaaacaagcTAGCCAGTTACGTAATCATCGTATAATGCATTTAGATCGCAAAACATTAGAAGTAACTCGATGGTATACTTCTAAGACGTGCGACATGTGCGGTAAAACGTATGCGAattcaaaatgtttaaagaaCCACATTCAAGCGGTTCATTCCAAGTTACGTCCGTATGTTTGTAACGTTTGCGGTCATGCTAGTGCCAGAAAGGCAATGTTACAAATGCATTTGCGTCAACATACAGGAGATAAACCTTTCAGCTGTGAGATCTGCGATTACAAAACTGGAGATCACAATACCTTACGACGGCATATTATGCAACACACAGGATTCCGACCGTATAAATGTCCACATTGCTCATATAGCGCGATACAGAGCAGcagttataaaaatcatttaaaatcgaGGCATCCTTTGCTGTCTGGCTTATTTACATGCGATCTGTGTCCTTTTAAAACGGTGAAAAATGAAAGTTACATCCAGCACTTAGGTGACCATGAAAAAggtttaataaaatctaatgtGCAGAAAAAAGATAACGAGAATGTCGAAGTCTTTCCTGGTAACATTGCGGCAGCGCAATTAGTTTATAGTTGTTTAGGCGCCTTTTCGAAAGATGGAGATACATTAGAAGCTAATTTGATGTCTTCCTCAACGTCTGCTGATGGCACTTCCCAAACAATCACGATACAAATACCATCGAAACATCTTCAAGGTTCATTATCAACAAGAGAAagtttaaacaaaaatgattcTATTGAGCAAGAGGATGACGAGACAATGCattgtttcttaaaaattcctagagaagaagaagaaagcaTAGATACTGGTGGTATAACGATACCTGCAGAACCTGAAGAAAGAAGTATTAGAACCATTGATATTGAAGAGACAAACATGGCAACAACTAGTGATATTGAAGAAACAAATGTGACAAATATCGATATTGATTCgtga
Protein Sequence: MSEEMNDMSYLSYDINGTRYIYKLALSPMDIMKNSAVSEEQTTVDIVKGSELDSGEEPISLVCLNGQVYAIKNGVIEEVSTNLQPVEQMSCNEKALSMSKNTENNENGYIKNENVVIESPYRQSEEQYEVATEEVVKDLVAQDDNVNVDDFLEVVTAFKCKMCTYLSQDKMQLLDHIQKLHLNSAIDITPKEESKMDEVKIVYMCAECSICFHSFEDCKEHMINDHQLTDIASDEAGKENLTDLANPGLVTEHEAQHIESNEAEKDPVKISKTLNSEYMRNRKMIESAERNVKCTYQGCQYKFVSEEIMQQHILYHTESETATTFKCTICRDVKFTKWRQCNLHLWKKHQIDIGLFTCKICKVYKSATMVKLLTHMRVHSDTRDYKCPDCEKCFKQASQLRNHRIMHLDRKTLEVTRWYTSKTCDMCGKTYANSKCLKNHIQAVHSKLRPYVCNVCGHASARKAMLQMHLRQHTGDKPFSCEICDYKTGDHNTLRRHIMQHTGFRPYKCPHCSYSAIQSSSYKNHLKSRHPLLSGLFTCDLCPFKTVKNESYIQHLGDHEKGLIKSNVQKKDNENVEVFPGNIAAAQLVYSCLGAFSKDGDTLEANLMSSSTSADGTSQTITIQIPSKHLQGSLSTRESLNKNDSIEQEDDETMHCFLKIPREEEESIDTGGITIPAEPEERSIRTIDIEETNMATTSDIEETNVTNIDIDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00885434;
90% Identity: iTF_00417863;
80% Identity: -