Tzet001702.1
Basic Information
- Insect
- Trachymyrmex zeteki
- Gene Symbol
- -
- Assembly
- GCA_001594055.1
- Location
- NW:365704-369694[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.063 4.1 7.4 0.8 2 23 143 165 142 165 0.94 2 13 0.13 8.7 6.3 0.4 2 23 170 192 169 192 0.91 3 13 0.023 1.5 8.7 0.8 3 23 447 467 446 467 0.97 4 13 0.00071 0.047 13.5 0.9 1 19 505 523 505 525 0.94 5 13 0.00088 0.058 13.2 3.5 2 23 534 555 533 555 0.97 6 13 0.00062 0.041 13.7 0.4 1 23 568 590 568 590 0.98 7 13 1.3e-05 0.00088 18.9 1.4 1 23 598 620 598 620 0.98 8 13 1.5e-05 0.001 18.7 4.9 1 23 626 648 626 648 0.99 9 13 0.00029 0.019 14.7 1.1 1 23 651 674 651 674 0.94 10 13 0.00033 0.022 14.5 1.7 1 23 688 710 688 710 0.98 11 13 0.0021 0.14 12.0 2.5 1 23 716 738 716 738 0.97 12 13 0.00013 0.0086 15.8 6.1 1 23 743 765 743 765 0.98 13 13 0.00035 0.023 14.4 2.2 1 23 774 796 774 796 0.96
Sequence Information
- Coding Sequence
- atggaTACAAAAGTAGactatttcgataaaaatgcaaatcttTTTCACAAGGAACTCGAAATATGTCGTTTATGTGGAGAAAAGTCTTCAGATTATATTCCAATATTTGAAGATGAAGATAACTATATTCCTGAAAAAATAAGTAGATGTTTACCAATCAttatttttccgAATGACAATTTACCTTCCAATGTATGCAGAcgttgtttaaattatttaaatattagttgTAAACTGATTCTTAGTGCAGTAGCAGTAGATGATATTCTACGAATTCAATTAGATCAGAAGCAGAAAGATGCTATCTTTACAGGTGAAGATCGTAGCATTGTAACATCTTGTGAAGAGTCTAAAATATCTGtaccaataaatattaagcaaTCGTCATTAAAGGAACTAAAAAAGCGAGCTATTGTCGGTCCAGTCGAATGTAATTTATGCGACTTGAATTTTCAAGATGTAGATACATTTGATAACCATATGGAacaatgtcattttttaaaatggaaatgtaATCTCTGCGATGACAGCTTTGATGAATCTAATAAGCTGATAGTACATAAGACATTGAGACATAAcagtaatatttcaatatgcaGTAGCTGTGAACATATTATTGATCAGAATAATAAACGGAAGATTATCAATGAGAATGATCAGACTAATGAGAGGAAGATTATTATAGGTAAGAATATCCAGAATGATCAGAATATTAAACAGAAGATTATAGATGAGAAGAATATTCAAAGTAATCGGGAAACAGAtcaaaagattattaataattacaataagcaagattttacaaaagatATCGAAATAGCAGCATCAGTTAATTCAgcgattatagaaataaacagCGAAAATAATCTGATGCAGGCCTCAATAAAGCAAATTGATAATAGATTCGATTcagatataaatgaaataaaaaactgtaaaaaatttatagatatgaCAAATGTCCAAAATGATGAACAAAGTAATGAACAAGAGTTTACAATCGGGAAGAATGTTCAGAATTATCAGAATATTGAACAGGAGATTATAGATGAGaagaatattcaaaataatcgaGAAACAGAGCAAGagactattaataaaattagttatgAAAAGCAAGATATCACTTTTACAAAAGATATCGAAACAGCAGCATCAATTAAATTAGCAATAGATACTGAAATCGatattacagaaaaagaaagtgAAAACGATCTGATGCAAGTCTCGATAAAGCAAATTGATAATAGATTCAACTCAGATATggatgaaacaaaaaatcgtaaaaaatttttaatacaacttGAAACGTTCAAAAAGCCAAGAGAACTAtcgttttgtaaaatttgcaaGATCTACTTCGCGAACgaacgatattttaatatccatAATAAGATACACGAGGAAAAAACTATGACTTGTATTACGTGCTCTACAGAACATTCGTCTGGATATGATTTATTTCTGCATAAACGTAAAAGGcacaatatgtataaaaaggtACAGTTAAAgtatatgtgtaataattgtggaaaattttttacacatagCTGGACTTGGAATGAACATAATGAAGATAAGTGTTCCAAAATGACAAAGTATTGTAAATATTGCAACGCAGTATTCTCGACAGATCTTAAATTGACACATCATTTACGGAAACACAAATCCGAGATGTTCAATGATCCGACTGTGACTGTATACAAATGCGTCGCCTGTCCCAAAGTATACGTcgacaaagaattttatgagaaacatagaaatATACATGATCCAGAGTGTTGGGATAAATTTCGGTGTACAGAATGCAATCGACCATTCAGAGACAAATTTCGTTTACAGGAACATCAATTGGTTCATTGGAATATTAAGCCTTATCAATGCAATATCTGCGAACGTTCTTTCTTCCGCCTGCATAACATGAAAAGACATCGCAAAATTCACGTTGGGCATGAGTGTAATCGCTGCAAtgcagtttttaaaaataggcTGGACTTAACGAAACATGTGCAAGAGATTCACGATTTGAAGCCATCcaataaattttctacaaaaataaattacatttgcaGATTCTGCGGCAAGAAGCTCAACACGTATAAATCGTTAACAAATCACGAAAGAATTCACACCGGAGAAATGCCGTATAGTTGTTCAATATGTTACAAGTCCTTTCGGACTTATAATTCCAAATGGACTCATGTACAACAACATCAGAACGGAACCTTTGTGTGtgaatattgtgaaaaatgtttcagttgtAAACGGAATTTAATTAAGCACATTTCAACGCACGTGCCAGTGCAAGCTCGCCAGCATCATGCGTGCAATATATGTGGGAAGAAGTTTTTGAGGAAATCTCGACTTACTATCCACAACCGTATTCATAATGAAATACGGTCTTTTTAA
- Protein Sequence
- MDTKVDYFDKNANLFHKELEICRLCGEKSSDYIPIFEDEDNYIPEKISRCLPIIIFPNDNLPSNVCRRCLNYLNISCKLILSAVAVDDILRIQLDQKQKDAIFTGEDRSIVTSCEESKISVPINIKQSSLKELKKRAIVGPVECNLCDLNFQDVDTFDNHMEQCHFLKWKCNLCDDSFDESNKLIVHKTLRHNSNISICSSCEHIIDQNNKRKIINENDQTNERKIIIGKNIQNDQNIKQKIIDEKNIQSNRETDQKIINNYNKQDFTKDIEIAASVNSAIIEINSENNLMQASIKQIDNRFDSDINEIKNCKKFIDMTNVQNDEQSNEQEFTIGKNVQNYQNIEQEIIDEKNIQNNRETEQETINKISYEKQDITFTKDIETAASIKLAIDTEIDITEKESENDLMQVSIKQIDNRFNSDMDETKNRKKFLIQLETFKKPRELSFCKICKIYFANERYFNIHNKIHEEKTMTCITCSTEHSSGYDLFLHKRKRHNMYKKVQLKYMCNNCGKFFTHSWTWNEHNEDKCSKMTKYCKYCNAVFSTDLKLTHHLRKHKSEMFNDPTVTVYKCVACPKVYVDKEFYEKHRNIHDPECWDKFRCTECNRPFRDKFRLQEHQLVHWNIKPYQCNICERSFFRLHNMKRHRKIHVGHECNRCNAVFKNRLDLTKHVQEIHDLKPSNKFSTKINYICRFCGKKLNTYKSLTNHERIHTGEMPYSCSICYKSFRTYNSKWTHVQQHQNGTFVCEYCEKCFSCKRNLIKHISTHVPVQARQHHACNICGKKFLRKSRLTIHNRIHNEIRSF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -