Basic Information

Insect: Trachymyrmex zeteki
Gene Symbol: -
Assembly: GCA_001594055.1
Location: NW:316575-321872[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0072 0.47 10.3 2.5 1 23 240 262 240 262 0.98

2 7 9.9e-05 0.0065 16.2 4.8 2 23 392 413 391 413 0.96

3 7 0.0001 0.0068 16.1 1.5 1 23 419 441 419 441 0.98

4 7 5.5e-06 0.00036 20.1 1.9 1 23 447 470 447 470 0.93

5 7 6.8e-06 0.00045 19.8 0.8 1 23 476 498 476 498 0.99

6 7 2.8e-07 1.9e-05 24.2 2.6 1 23 504 526 504 526 0.99

7 7 2.7e-07 1.8e-05 24.2 0.9 1 23 532 554 532 554 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0072	0.47	10.3	2.5	1	23	240	262	240	262	0.98
2	7	9.9e-05	0.0065	16.2	4.8	2	23	392	413	391	413	0.96
3	7	0.0001	0.0068	16.1	1.5	1	23	419	441	419	441	0.98
4	7	5.5e-06	0.00036	20.1	1.9	1	23	447	470	447	470	0.93
5	7	6.8e-06	0.00045	19.8	0.8	1	23	476	498	476	498	0.99
6	7	2.8e-07	1.9e-05	24.2	2.6	1	23	504	526	504	526	0.99
7	7	2.7e-07	1.8e-05	24.2	0.9	1	23	532	554	532	554	0.97

Sequence Information

Coding Sequence: ATGGAAGTTACAACGGAAGAGGCACAGGCTGTGCTTCTAGAAGGAATGGAGGGTGCTCAATATATTACCATCCAGAGAGCCGACGGAGAAGTCTTGAGCAAGGGAGTACCGCTGTTAACTCTGAATGGTGAATTAATCTCCGACGGCATGGTCGTGGATATGATTAATGCAGGCGTTGGCACAGACTATGGCACTGGCACGCAGTATTATGAGGCGGAAGACTTGCTGTCGCATGAATTAACAGAAAATGTGAATTGTGTGATGCAGGAAGACCGTAGACTTACCGCGGCCTTGGTCGCGGTACAGTTGCAGAAACAGCAGCTCCATATCCAGTCACAACACGAGGACCCGACTCTACCAGACGTTTCACATCTCGAGACCCTGGCGCCAGTGAATTCGTACTCCATTCAAGCAGTACCAGAACCAAACGCCGCTCCGTCCGTGTATCCACCTTTACAACTTTTCAAGAGGATTACGCATAATGTAAAGCAAGAGTTTATCAACGTTAAAAGCGAATACGACGTTGAGGTTTCCACGGAAAGTAGTGAGGATGCCACGTCGGCATCTGGACCCAAAAGAACCCTGCCACACAAAAAAAGGATACCTCGGAAGCTAAAACAACAGCAAACAAAGAAGAACACGACGCGAAAAGatagtaataaattgattCAAGAGAATGCAGCAATTGAATTGACTAGCGAAGCTCAGACTAACGTCTTTAAATGTGAATTGTGTAGTTCTAAGTTTAGCAGTCAGTTAAAGTTCTTTGAGCACTTAAAGgtACATTATGAACCAGTAAAACAAGAAACGCGAATAGCTCAAGCAACAAATACTAATATCTCTATATCAGTGCCGGAAACAGTACACAGTTTAGAGAATACCGTGATTGAAGAATTTAGTGAACCTGAAGACCTTATGGAGGGTATTCGAAACGTAGTGGAAGAAACTGGCGCGCGTATCGACGATGAGACGGACTCTCCGCTATCCACTTCGAACACCGAATCAACCATGTGGACCATTACTGGCGTCACAGAAGAGGTACAACAAAGGGACCAACAAATAAAACCACCGGAAGTTAGTAATGATAAGAGTTCCAACGAGAAGGCAAAGACTGACATTCCACGAACGgccaaaaaaaagaaatcatcgAAAACACGAAAGTTAAATGAATTAATATGTGATCAGTGTAATCGTTCATTCCaccataaaaatagtttaatttacCACATGCGATCTCATAGCGGAGAACGGCCGCATCAATGCGATATTTGCAGTAAACGTTTCTTTGCTGCCAGCGCGTTGAAAGTACATAAGAGACTTCATAGCGGTGACAAACCGTACAAATGCGAAGAATGTGGACGACACTTTCGACAATGGGGCGACTTAAAGTATCACTCGACGAGTCTCCATTCGGAACACAAACAGTATCAATGTGAATTTTGCGCCAAGGAGTTTGCCCGAAAATACTCACTGATCTTGCATAGGCGTATCCACACTGGCGAGAAGAACTATCGTTGCGAGTATTGCAACAAAACGTTTCGCGCGAGCAGTTACTTACAGAATCATCGTCGCATACACACCGGCGAGAAGCCGCATCCGTGCGGGGTGTGCGGAAAGCCGTTCAGAGTACGAAGTGATATGAAGAGACACATGCAGACGCACAGTCGAACGAAAAAGAATGACAAGCAAAAcaaaacgaagaaaaatgtGCAGCAGATAGGGAGCAACAAGGGAACGCAGGCAAAAACGATTCAGGATCTCGTGAGAGATCTGAAACTGGAAGTCGAAGCAACAGGTGTTGTGGAGATTGTCCCACCGGATGATAATCAGGAGACCATTTTGCCACATACAGGCGCTCAAACCTTGGAATACACCGTGACATCTACAGCAGATACTGTAAACAGGGATCCTTTGGAAGCAGTTGTGCGAACGACTGATAGTATgcaatatttttttatgtaa
Protein Sequence: MEVTTEEAQAVLLEGMEGAQYITIQRADGEVLSKGVPLLTLNGELISDGMVVDMINAGVGTDYGTGTQYYEAEDLLSHELTENVNCVMQEDRRLTAALVAVQLQKQQLHIQSQHEDPTLPDVSHLETLAPVNSYSIQAVPEPNAAPSVYPPLQLFKRITHNVKQEFINVKSEYDVEVSTESSEDATSASGPKRTLPHKKRIPRKLKQQQTKKNTTRKDSNKLIQENAAIELTSEAQTNVFKCELCSSKFSSQLKFFEHLKVHYEPVKQETRIAQATNTNISISVPETVHSLENTVIEEFSEPEDLMEGIRNVVEETGARIDDETDSPLSTSNTESTMWTITGVTEEVQQRDQQIKPPEVSNDKSSNEKAKTDIPRTAKKKKSSKTRKLNELICDQCNRSFHHKNSLIYHMRSHSGERPHQCDICSKRFFAASALKVHKRLHSGDKPYKCEECGRHFRQWGDLKYHSTSLHSEHKQYQCEFCAKEFARKYSLILHRRIHTGEKNYRCEYCNKTFRASSYLQNHRRIHTGEKPHPCGVCGKPFRVRSDMKRHMQTHSRTKKNDKQNKTKKNVQQIGSNKGTQAKTIQDLVRDLKLEVEATGVVEIVPPDDNQETILPHTGAQTLEYTVTSTADTVNRDPLEAVVRTTDSMQYFFM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01422432;
90% Identity: iTF_01262005;
80% Identity: -