Basic Information

Insect: Trachymyrmex zeteki
Gene Symbol: -
Assembly: GCA_001594055.1
Location: NW:204691-205851[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.9e-05 0.0013 18.4 1.4 2 23 87 109 86 109 0.96

2 8 0.00087 0.057 13.2 0.7 1 23 125 147 125 147 0.97

3 8 9.3e-05 0.0061 16.3 0.9 1 23 173 195 173 195 0.97

4 8 0.0029 0.19 11.6 3.2 1 23 204 226 204 226 0.98

5 8 2.9e-05 0.0019 17.8 0.4 1 23 281 303 281 303 0.97

6 8 2.6e-06 0.00017 21.1 0.8 2 23 309 330 308 330 0.97

7 8 1.9e-07 1.3e-05 24.7 0.7 1 23 336 358 336 358 0.95

8 8 8.6e-05 0.0057 16.4 1.0 1 23 364 386 364 386 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.9e-05	0.0013	18.4	1.4	2	23	87	109	86	109	0.96
2	8	0.00087	0.057	13.2	0.7	1	23	125	147	125	147	0.97
3	8	9.3e-05	0.0061	16.3	0.9	1	23	173	195	173	195	0.97
4	8	0.0029	0.19	11.6	3.2	1	23	204	226	204	226	0.98
5	8	2.9e-05	0.0019	17.8	0.4	1	23	281	303	281	303	0.97
6	8	2.6e-06	0.00017	21.1	0.8	2	23	309	330	308	330	0.97
7	8	1.9e-07	1.3e-05	24.7	0.7	1	23	336	358	336	358	0.95
8	8	8.6e-05	0.0057	16.4	1.0	1	23	364	386	364	386	0.98

Sequence Information

Coding Sequence: ATGTCCTTGGGTTTTGTCAATTTCAGGGAAGGAGGCGGGACCTTCGGTGGATTATCAGGGATGCTGCGTCAGATTCTCTCGCCCTCGCCCGAGATCGGGGAGGCCGGTATGTCCGTCAGTTGTAATCTCCTACAGACCAACTCGATATTTTCGAATCAATCGTCGATGCTTTCGTCGACATTGTTCCCCCCGCATTTTCAATCTGTGTGTCCGGACCAGTCTCTGCTTGATCAGGTGCAAATCTTTACTGAGTCTTGTCCGTGTCCTACGTGCGGCCTGGAATTCCGAAGTGCCTTTAAGCTAAACTACCACTTGCGAACAAGTCACGCCGCGCGTCCGGAATTCGAACATTGTATCGAGAATCAGCCGCGGTACTCGTGCGCAATCTGCTCGCGGACCTTCGTTGCTTTAAATCACCTGAGGATGCACGAAGTTACGCATTCTACGCCCATGCCCACATGCGCGTCAACCTCCGCCAATTTCGCTACACCGCCCGGTGGCAACGTGGAAAAAGCATTCGCCTGCGATCTCTGCCAGGCCAGATTTCGGTATCGCACACCACTGGAACGTCATCGGAGGATGCACCAAGAGGTCAGCCAAGAGAAACCCTATTCTTGTCCGAGATGCTTGATGCGCTTCGAAACGCGCAATTTGTATAATCACCACGCGAAAACTCATAGACCGTTGCCGGCGAGTAATGAAAATCGAATAGTCGCGGGTACCAATGCGGTGTCGTCGCCTGTCGATTCGGTGGTAACTGGCAATCTCGGGGTTGTCGGTGGCGGTGCCGGCGGCGGTGGGAGTGGTGGACCCGTAATGCCCATCAAGTCTGTACCTTCTTATCCTTGCGACTCGTGTTCCAAGCAGTTCACGACCGCCGAATCGTTGACCACGCATAAGGCGGTGCACAAGTCGCGACCGCTAGTCTGCGACGTATGCGGCAAGGGCTTCACGCATCGCAAGTATTACGTGGTACACCAGCGCATTCACACCGGTGAGAGGCCGTATCTCTGTGCCATGTGCGGCAAATCATTCACGCAAGCGTCGACGCTCACCGTGCATCGCCGTTATCATACGGGAGAGCGTCCGTATACTTGTACGCTATGCGGAAAGGGATTTGTCACGCGAACGATTATGCTTAATCATATGAAGAAACATTGA
Protein Sequence: MSLGFVNFREGGGTFGGLSGMLRQILSPSPEIGEAGMSVSCNLLQTNSIFSNQSSMLSSTLFPPHFQSVCPDQSLLDQVQIFTESCPCPTCGLEFRSAFKLNYHLRTSHAARPEFEHCIENQPRYSCAICSRTFVALNHLRMHEVTHSTPMPTCASTSANFATPPGGNVEKAFACDLCQARFRYRTPLERHRRMHQEVSQEKPYSCPRCLMRFETRNLYNHHAKTHRPLPASNENRIVAGTNAVSSPVDSVVTGNLGVVGGGAGGGGSGGPVMPIKSVPSYPCDSCSKQFTTAESLTTHKAVHKSRPLVCDVCGKGFTHRKYYVVHQRIHTGERPYLCAMCGKSFTQASTLTVHRRYHTGERPYTCTLCGKGFVTRTIMLNHMKKH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01099420;
90% Identity: iTF_00885367;
80% Identity: -