Tzet008068.1
Basic Information
- Insect
- Trachymyrmex zeteki
- Gene Symbol
- -
- Assembly
- GCA_001594055.1
- Location
- NW:7635-12214[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.024 1.6 8.6 0.2 3 23 453 475 452 475 0.94 2 10 0.0014 0.095 12.5 1.4 1 23 481 505 481 505 0.98 3 10 0.00013 0.0088 15.8 0.2 1 23 511 535 511 535 0.97 4 10 8.1e-05 0.0053 16.4 0.1 3 23 543 565 541 565 0.93 5 10 4.1e-05 0.0027 17.4 1.7 1 23 572 596 572 596 0.97 6 10 3.6e-05 0.0023 17.6 0.7 2 23 604 627 603 627 0.95 7 10 3e-06 0.0002 20.9 2.0 1 23 633 657 633 657 0.98 8 10 3.1e-06 0.00021 20.9 0.5 1 23 663 687 663 687 0.97 9 10 4.5e-05 0.003 17.2 0.9 1 23 693 715 693 715 0.99 10 10 0.013 0.85 9.5 0.1 1 23 794 819 794 819 0.97
Sequence Information
- Coding Sequence
- ATGTCTTGTAAAGGAACTGCTGCCATCACCGCATGTACATCGAGACGACATAGTCGCGAGAGAATTAGCTCCGAGAGCGAAGGAACGGAATGCACGTCCGTCGATGCTCTTTTTGCTTCGTCGAGAACGGAAGAGGTCGTTAAGAGGGATCAAAGAACAAGAAGAAATGAGAATTGGCAACAAACGGTGACTGGAAAGGGTGTTGACGTCGTCGAAACGGTAGCTGACTTTGAGAAATGGCTTAAGATGCGTAGCACGGAACCGCCGGTGCCATCGAATATGGACTTGGACACAACTAAGATGGTGGAGGGTGTAGACCGGTATCTTGGTGAAGAGGTGCTATCACATGGCTGCTTTCTGAGCAAAGATCCATATGGTCTGTCCATCGACATCGATTTGGCAGATACCAAGAAGCTTAATCTATCGTCAAGCTATGATCCGATACTACAGGATCTGACGCACAGCGAGAACCGATTACTGGAGCCACCGTGCGAGAAGGTCGTCGATGAGTTTATGTTACCAGAGTTCCAGCTGGATCATTTGGATCCACTAGTGACCCTCACGCCGGATGACATGATAGTGGCTGGTGAGATTCTACCGTCTGCAAGCAGCCAGCCAATAATAAGTGTAGAAAATCAACATCGAGTCGAAGAAAATGCTCCAAAAACAGGAGTTCCTGTGCAGAACAATGAGACACCCTGTGAGAAATCCACACAGGTTACTCTCAATCAGCTACCAGTGAATATAGTCATGAACGAAATGGAGGATGCAAAGACAGAACAGGAAACTGTAGTACAATCTTCAGTAAGTTCCTCGGAACTCTTCATTGGGACTTTACCACCGATGGAGGAGAACTCGTCGAGTACCATGACAAATTCCATGGAAATAGATACGCATGGTATGGTAATAGAACATTTGAAGAAAACGAAACTCGAACCTCGTATCATCAAGAAACGTCGTCGACAGATGACAGAACGACTGGAGAAGAAGCTTGATAAGCATATTAATGGCAAAAGCTTTGCAGTTGACACGGACTCACAGGATGGCATGATGGCTGTGGTCGCTATATCTACTGACAAAACCTCCAACATGACACAGATTGTTATTAATACTGGCACAGAGAAACAGATCTATCAAGGCAAGACTTCGGAATTGATTGAAGCAACAGGCAATTTTCCAAAATTGCCCAAGATAGATACTTCGGCCGCAGTTTGGAATGGCACAGTTGAATATGGTACCGATAGTAATCCAAGTAACCAATATGAAATTGTTATATCCAATGCACTGGAGGAATTAGGTATCACCGATGATAGCCTGCAACCTTTGTGCACCACCGAACACGACAAGGTGTGGCTTTGTCCACGAGATGGCTGCaacagacaatttggtagATTGTACACTCTGAAGGGCCATTTGTTAGCCCATTATGGAGTTAGACCGTTTAAGTGCGACTTTGAGGGCTGCACTTGGGCCTTTTATTCAGAGTTCAAGCTGAAGAGACACAAGGAGACACATTTGAAGCGCAAGGATTACGTGTGCGAGGTGGAAGGCTGCAATCGTCGTTTCACCACCGTCTACAATCTATGGAGCCACGCCAAGTTGCACAATCGTCCTAATCGGATCGTGTGTCAGGTGCCAGACTGCGGTGAGAAGTTTCAGACAAAACGAGCATTGGAACTACACATGAAGTCGCACGATCAACGCCATGCACCTTATGTGTGTCAGCATGAGGGTTGTGGCAAACGTTACTACAGTAGCAATGCATTGACATCACATCAACGATCACATAGCTATAAGGAAGTGGACATCAAGTGTTCATGGCCGGATTGTGGCAAGATTTTCGACAAGCCTTGCCGACTCAAAGCGCACATGCGATCTCATACCGGCTATAAACCCTATCCTTGTACTTTTCAAGACTGTAAGTGGGCTTTCTCATCATCCAGTAAGCTTAAGCGCCACCAAAAGAAGCACACGAACGAGCGTAAATTTGTGTGCGACGTGCCGGATTGTGGTAAGGCATTTATGCGCTCGGAACATTTGAAGGAGCACCGGCTAACGCACACGGAAGGCCGCTTTTTCCAATGCTTCGTGTGTGATGCCCGATTCTCCGCCAAGAGCAGTTTGTACGTACACATCAAGAAGCATCAGCAGGCTAAGCCAGACTTGAACGTAGTCAATAATATGCTCGAGTGCACTTCCGGTAATAAAAAACGTACGAGAACAAAAGAATCTCATTATTCGCGAGTGAAGCCGTCAAGCAAGTCGAAACGATGGAACACAGAACTAATAAATGCCGCGGAGACTATCACGAACGAAAATGATGTTGAGAAGCAGAGTGCCAGTGCATGTTCCCAGGATGAGGATCAAATGGAGTGGCTGTATCGTTGTCCAATAGAGATATGCGGACATTTAATCAGCAGCGAAACGGGTCTTCGTGAGCACATGTTAAAAGCACACAGCATACAATGCGACGATTTGTTGACTAAATCGTCTTCGAACGATGTCGACATAGATTACGTTTTATGTACCGTGCACAGTTCGCCAAGTTTATCCACTGTCGTCGAAGAAGAACAAATGGTCATGGTGACTCCGTGCGATGCCGTCATTCTTGATACCTCCTCGTCAAAAATAGATCATTGTTTGCCGGAACCGGAACCTTTCAACACCTTGCTGAAGAGCTCGGAACCGTTTCAAAATGATACGCAAAATGAGCGGATCGACAAGGAAACTGTATCAGTGAAGGAGCAGGGTTCAGCAAGGACAGATCTAACATATTCTGATTGGTCTAAATTGAAGAATAGTACATTGATGAATTCGGTAATAACGGAAACGTCGGACATTGTATTGGGCACAAGTGATGATTTGAGCGAAGGTCTGTTGCTCACAGAAGAGCTACCATCGATGTACTATCAGGACGATGTGGCAGGTACGGAGTATCAGGTGCTGTTATTAGATTCAAGTCCGCTCGAGAGTGCCAGTAATTTACGCGGTCTCGAGTGA
- Protein Sequence
- MSCKGTAAITACTSRRHSRERISSESEGTECTSVDALFASSRTEEVVKRDQRTRRNENWQQTVTGKGVDVVETVADFEKWLKMRSTEPPVPSNMDLDTTKMVEGVDRYLGEEVLSHGCFLSKDPYGLSIDIDLADTKKLNLSSSYDPILQDLTHSENRLLEPPCEKVVDEFMLPEFQLDHLDPLVTLTPDDMIVAGEILPSASSQPIISVENQHRVEENAPKTGVPVQNNETPCEKSTQVTLNQLPVNIVMNEMEDAKTEQETVVQSSVSSSELFIGTLPPMEENSSSTMTNSMEIDTHGMVIEHLKKTKLEPRIIKKRRRQMTERLEKKLDKHINGKSFAVDTDSQDGMMAVVAISTDKTSNMTQIVINTGTEKQIYQGKTSELIEATGNFPKLPKIDTSAAVWNGTVEYGTDSNPSNQYEIVISNALEELGITDDSLQPLCTTEHDKVWLCPRDGCNRQFGRLYTLKGHLLAHYGVRPFKCDFEGCTWAFYSEFKLKRHKETHLKRKDYVCEVEGCNRRFTTVYNLWSHAKLHNRPNRIVCQVPDCGEKFQTKRALELHMKSHDQRHAPYVCQHEGCGKRYYSSNALTSHQRSHSYKEVDIKCSWPDCGKIFDKPCRLKAHMRSHTGYKPYPCTFQDCKWAFSSSSKLKRHQKKHTNERKFVCDVPDCGKAFMRSEHLKEHRLTHTEGRFFQCFVCDARFSAKSSLYVHIKKHQQAKPDLNVVNNMLECTSGNKKRTRTKESHYSRVKPSSKSKRWNTELINAAETITNENDVEKQSASACSQDEDQMEWLYRCPIEICGHLISSETGLREHMLKAHSIQCDDLLTKSSSNDVDIDYVLCTVHSSPSLSTVVEEEQMVMVTPCDAVILDTSSSKIDHCLPEPEPFNTLLKSSEPFQNDTQNERIDKETVSVKEQGSARTDLTYSDWSKLKNSTLMNSVITETSDIVLGTSDDLSEGLLLTEELPSMYYQDDVAGTEYQVLLLDSSPLESASNLRGLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00128451;
- 90% Identity
- iTF_00182797;
- 80% Identity
- -