Tzet006013.1
Basic Information
- Insect
- Trachymyrmex zeteki
- Gene Symbol
- -
- Assembly
- GCA_001594055.1
- Location
- NW:1237697-1270099[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.46 30 4.6 0.4 6 20 359 373 358 375 0.94 2 9 6.2e-07 4.1e-05 23.1 2.6 1 23 615 637 615 637 0.98 3 9 2e-05 0.0013 18.3 2.0 1 23 643 665 643 665 0.98 4 9 1.2e-06 8.2e-05 22.1 0.3 2 23 674 695 674 695 0.98 5 9 4.1e-05 0.0027 17.4 0.1 3 23 703 723 701 723 0.97 6 9 1.4e-07 8.9e-06 25.2 3.0 1 23 729 751 729 751 0.98 7 9 2.2e-06 0.00015 21.3 0.7 1 23 757 779 757 779 0.98 8 9 4.7e-05 0.0031 17.2 7.5 1 23 785 807 785 807 0.98 9 9 0.00026 0.017 14.8 1.4 1 21 813 833 813 834 0.94
Sequence Information
- Coding Sequence
- ATGATGGGAGAAGTGATCCGCGTTTCTGGGAGGGCACCGGACGTCGGTGACATTCTGAAGGAGGCCATGTTGTCGCAGAGGTTCGCTGATGTGGCCCTGTGCTGTCCGGGAGGTCAGCGATTCCTCGCGCATCGTTTAGTTCTGTCAGCAGCCAGCTCTTATCTTCAGGAGGTGTTACTGGCACACAGCAAAGTCACAGCTCATTGTGAGCCGATTACAGTGATCTTGGCAGAGGTGGAGGCGCCGGAACTCGCGGCTCTTCTTGGCTTCGTCTATACCGGAAGCGCTACTGTTCCACGGATGCGACTGGACGCGTTTCTGCGTGCTGCCGAGGCCCTGCGCATCCGGCTTCCACCGGTGCCAGTGATGACGACCTGCGGGGAGCAAGCAACGGACTGCAAGCTGGAGGACGTCAAGGATGTCAAAGTTAGCCCCAAGTACCTGCAGTGCGATCAGTATCCTTGGTACCGATCGAAAAGATTATCTTACGAAGACCCGTTTGACAGGAAAGAGTCATACATTAGGATATTCCCTACGGACGACGTCAACAGAAATACGTTTAGGGATATTGGAGCGTTTCACGAAGTTAACAATCCTGGACCATCGTTTGGTCCTAGTTGTCCGAATTCGTGGCCAATAGGCGGTTTCCTGCATCAGGATAGAGCAACAGGTGATCCTTCCGCGGACAAAAATCACAGCTTGATGATACTTGCTGACAAGAATCCGGTAATAGCTCCTAGTAACGAATCGTCCTTCAATATATACCAACGAGGTACGTGTCTCCTCGGAGGATCGTCTTCGGAAGGATACGCTGGTGCAGATACTTTGGAAAAGATCAGAACGAGATACGAGAGGTTGCATACGAGTTGCTCGCCGGAGAAGCTGATAATGAATGAGGATGTTCTTGTGGAAGGATCGGGAGGAGAGTCTTGCGGAACGACGCGGGACGAGTATCCATACCAGGGCACGACGCCGTTGTCGTCCTTGCAATGCGCGGCCGCCACCACCAGCCAAACGAGGTCGTTCGAGATGCTCGATTACACCTCGCAGACTTCGGCGGGCGAGGATCTCAGCTGCGGCGAAAGTTGTTGTAGGTGGAGAACCGTTCGCAGACACGTGGCAAATCGCGTCACCGCGTCACCGTGGCGCCAGATTGTTAGGCCCCATCATTCACCGAGGAACCCACGGCCCATTCTTGTGCCTCAACGTCATGATAATGACGAAATCCATAAGAAGCCTCAGGCGCCGGAACCAACTCGATCTACGGTAATATCGAGCCCGAAGAATATtgttcattctccaagaagcGCACCGCGAAGCGACGGGCCTTGCCCTACGGCTTTCGAAGTTCCTACCAGTTGCGAGACGAGCTTCAATAATGACTCGAGATTATCGCGCGAGATAATCGGTGGTCCTGAAGCGAAGATCCAAGAGATCTATCGATCACCAATCTCATTTGCACCTTCTGATCAAATCGCACCGTCCGTGAACGCGACGAGAAGCAGCGAACAACCCCTCTTCCAGAACGTTGGCAACACGCCCGCGCAATCGTTGTCTTCGAGCAACGACAGCGTTATCACAAATGTCGGAAAAGGTGGTGGATATCCGACGCAGGTAGTTCCGCAGACGCCAACGAAACCCGAATTGTCGCATCCGATCAGTAGACTCTGCGACACAATTGAGGCCGAAGAGAAGAAGGAGACGTCGAAGACGGAAGTGACGAACGTGGAAAAGAGCGGAGAAGAGAGAATTGCGAGGATTTTTGTTAACAGCgacaataacaataacaacgAGGCAATCGTAAGCACGGAGGTGGCGCAGCGCGGACGATCGGTGGATGACCACAAGTGTGATCAATGTGGAAAGACTTTCGTCACGAGGGCGTCGCTCAAGGTGCATAGCCGAACGCACTCCGGTGAAAAGCCGTTCCGCTGCGCCGACTGCGGCAAACAGTTTTCGCAGCTGCGCAATTACAAGTACCATCGCAGCGTGCACGAGGGCACGCGGGAGTTCGCCGCCACTTGTCCGGAATGCGGCAAATACTTCAACGACCGCGGCTACCTGAGCTCGCACATGAAGATTCATCGGAACCGCAAGGAGTACGGCTGCGCGGAATGCGGGAAGAGCTTCAATCAACGAGTGGCCTACAACATGCACGTGCGCATACACACGGGCGTAAAGCCGCACCAGTGCGATCAGTGCGGAAAGGCGTTCTCGCGGAAGATGTTGCTCAAGCAGCACCTGAGGACCCATTCCGGCGAGCGGCCGTATCAATGCCAGGTCTGCCAGAAAGCGTTCGCCGACCGCTCCAACATGACCCTACACACTAGACTGCACTCCGGCTTGAAACCCTATCAATGCACCCTCTGCTCGAAGGCTTTCACCAAGAAGCATCACCTGAAGACTCACCTTAATTATCATACCGGTACCAAACCGTATTCCTGCACCAATTGCGGTGGTAGGTTCTCGCAAAGCAGCAATATGAGGAcccattttaaaaagtgtattGTTAACAATACTGTAGGTATGGCAACGAAATCTGGCGATGAAGCTGGTACTGATCGCACCGATGCCGACAGCAATATAGCGCCGCAGGTGATCCTGACCCCGCCCAACTCCGATCAGGAATCCAGTATCCTGACACCGATCTCGAAGAACGCTGTCGCGATAGAGAGCAACACGTAG
- Protein Sequence
- MMGEVIRVSGRAPDVGDILKEAMLSQRFADVALCCPGGQRFLAHRLVLSAASSYLQEVLLAHSKVTAHCEPITVILAEVEAPELAALLGFVYTGSATVPRMRLDAFLRAAEALRIRLPPVPVMTTCGEQATDCKLEDVKDVKVSPKYLQCDQYPWYRSKRLSYEDPFDRKESYIRIFPTDDVNRNTFRDIGAFHEVNNPGPSFGPSCPNSWPIGGFLHQDRATGDPSADKNHSLMILADKNPVIAPSNESSFNIYQRGTCLLGGSSSEGYAGADTLEKIRTRYERLHTSCSPEKLIMNEDVLVEGSGGESCGTTRDEYPYQGTTPLSSLQCAAATTSQTRSFEMLDYTSQTSAGEDLSCGESCCRWRTVRRHVANRVTASPWRQIVRPHHSPRNPRPILVPQRHDNDEIHKKPQAPEPTRSTVISSPKNIVHSPRSAPRSDGPCPTAFEVPTSCETSFNNDSRLSREIIGGPEAKIQEIYRSPISFAPSDQIAPSVNATRSSEQPLFQNVGNTPAQSLSSSNDSVITNVGKGGGYPTQVVPQTPTKPELSHPISRLCDTIEAEEKKETSKTEVTNVEKSGEERIARIFVNSDNNNNNEAIVSTEVAQRGRSVDDHKCDQCGKTFVTRASLKVHSRTHSGEKPFRCADCGKQFSQLRNYKYHRSVHEGTREFAATCPECGKYFNDRGYLSSHMKIHRNRKEYGCAECGKSFNQRVAYNMHVRIHTGVKPHQCDQCGKAFSRKMLLKQHLRTHSGERPYQCQVCQKAFADRSNMTLHTRLHSGLKPYQCTLCSKAFTKKHHLKTHLNYHTGTKPYSCTNCGGRFSQSSNMRTHFKKCIVNNTVGMATKSGDEAGTDRTDADSNIAPQVILTPPNSDQESSILTPISKNAVAIESNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01523510;
- 90% Identity
- iTF_00014912;
- 80% Identity
- iTF_01477750;