Basic Information

Insect: Trachymyrmex zeteki
Gene Symbol: -
Assembly: GCA_001594055.1
Location: NW:1057331-1062140[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.7e-06 0.00011 21.8 2.8 1 20 320 339 320 341 0.96

2 9 0.0043 0.28 11.0 0.7 1 23 405 428 405 428 0.93

3 9 6.4e-05 0.0042 16.8 1.7 1 23 458 480 458 480 0.98

4 9 5.4e-06 0.00036 20.1 3.4 1 23 486 509 486 509 0.97

5 9 9.5e-06 0.00062 19.4 0.2 2 23 516 537 515 537 0.97

6 9 4e-08 2.6e-06 26.9 1.1 1 23 543 565 543 565 0.99

7 9 9.2e-06 0.0006 19.4 1.0 1 23 571 593 571 593 0.98

8 9 4.4e-05 0.0029 17.3 3.1 1 23 599 621 599 621 0.96

9 9 0.00035 0.023 14.5 1.7 2 23 628 650 627 650 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.7e-06	0.00011	21.8	2.8	1	20	320	339	320	341	0.96
2	9	0.0043	0.28	11.0	0.7	1	23	405	428	405	428	0.93
3	9	6.4e-05	0.0042	16.8	1.7	1	23	458	480	458	480	0.98
4	9	5.4e-06	0.00036	20.1	3.4	1	23	486	509	486	509	0.97
5	9	9.5e-06	0.00062	19.4	0.2	2	23	516	537	515	537	0.97
6	9	4e-08	2.6e-06	26.9	1.1	1	23	543	565	543	565	0.99
7	9	9.2e-06	0.0006	19.4	1.0	1	23	571	593	571	593	0.98
8	9	4.4e-05	0.0029	17.3	3.1	1	23	599	621	599	621	0.96
9	9	0.00035	0.023	14.5	1.7	2	23	628	650	627	650	0.94

Sequence Information

Coding Sequence: ATGGAGTCTAGTAATTCGATGCCACCAGGAATGGATTCTCCCGGCGAAGACATTATTCTGATCGAGACTGTAAAGAGTATAGTGTCGCGTGAAGGGCGCAATGAAACAGAGGAAACCGAAGAGGACTTCTTCCTGATATCGCAGGACCAGGCTGTACAATATCCCGAAGGGAACATTGAAGAAACGATGTCTCACAGGCATCAGACGGAGATCACGTTGGCATGGATGCATCTCTGCAGGATATGCGCTAACGCGAGCAATCGTATGATACCCATCTTTCAGGGCGAGGGAGCGCAACATGACTTGATCAGCAAAATACTCAAGTACTTGCCGATACATGTAACCGAAAGCGACACTTTACCGTTGCAATTGTGCGAGCGTTGCGCAAACGTCCTAATGGCCTGGCACGAATTAAACGAAGAGTGTTTAAATGCAGAGAGGAAGCTGCTGGAAATGCAAGATTCGCACCTGCGAAATAAGCAGCAGTATTACAATCCTTCTCTGGATAATTTAGAAGTTACTGCGCCAATGTTCACAACAGCCAGCACGACCATTGCATCTAATATTACATCTAATATTACGTCAACTATTGCGTCTAATATTACGGATCTACCAAGTCAGCAGGACGATGACAAAAGTGGAGTTTGCAgcatggaaaaaattaataaacctAACAGGTGCGAGCTGGCAGAGGAGAGATCTTTCACGACATATCATTCCTCGTGTAACGCTGCACTGACGAGTAATGCCACGATAAAGTACAAAAGCAATCCGATGAGAAGCATGACGTTGATTGCAGAGAATGCTAAAGAAATTTCGAAAAGAGAAACACGCAATTTGTCGGGTAATTGCAACGCAGAAAAATATGACGAGAAAACGGACTCGAACGCTTCACGAgctcaagaaaaaaatgaatcgaCAATTCTACAGTCAACGAGTGAATCTGTGAAGAAGGGTTACACTTGCGATAACTGCCAACGTgtctttaaaagaaaacacCATCTAATCCGCCATATGACGGACTGCAAATGTCACGATTCAGCCAAAGAAGATTTAACAAGAATGCGTAGTAAAATgacagaaaagaaaaagaagccCGATGATGGtacgataaaaaagaaagaacgcTTGATAGAAGATATTAAGAGCACAAACGACGATGAAGAGTCTTGCCTTTCATCAGTAAAACCATTGAAAAAACAATTCAGGACTTATCCATGCAGTTATTGCGAGCACACCGCGGAGAGAAAGaaactgttaaaaattcatcTGACGGAGGCGCATCCCGAGGTCGTAAATAGAAGTCGGAAGTCCTTTGTGGCCACAGAAACGGTGCTTCGCGCGCGAATAGAGCACGATGGTAAGATTTACTATCATTGCAATGAATGTGGCAAGAATCTGAATTCACCGTACACCTTCTACTGGCACTTGCGCATCCACACGGGCGAGCGACTATTTACCTGCCACCTATGTGGTAAACGGTTCCGCGTGAATCAAGGTCTGACGCGACATTTAAAGAACACTCACGCTGGCATCAAGAACGTACCATGCGATCTGTGCGGCCGCATGTTCTCGACGCGGCGCAACGTCGAGGATCACAGACGCATTCATACCGGCGAGCGGCCGTACGTCTGCAACATCTGTGGCAAAACGTTCAAGCAAAAAGCCTCCTTGTTCGTGCATAATCGTACGCATTCGGACGTATTTCCATTTAAATGCAGTTACTGCGATCAGACCTTTCGCACACGGCCGCCGCTGATGGTGCACATCACTAAGCATACTGGTGAGAAGCCGCACGCGTGCGATGTGTGCGGTCGTCACTTTCGCATCAAATATGAGCTAAAGCGGCACCGATTGATTCATTCTGACGAGAAACCCTGGCGCTGCACCGTCTGCAGCCTCTCGTTCCGCCAAAAGCGCTACTTAGTTAATCATAAGAAGCTCAATCACGAGCCACCACGAAGTTTGGCCGCCCCCCAAGTAACGGGCTGA
Protein Sequence: MESSNSMPPGMDSPGEDIILIETVKSIVSREGRNETEETEEDFFLISQDQAVQYPEGNIEETMSHRHQTEITLAWMHLCRICANASNRMIPIFQGEGAQHDLISKILKYLPIHVTESDTLPLQLCERCANVLMAWHELNEECLNAERKLLEMQDSHLRNKQQYYNPSLDNLEVTAPMFTTASTTIASNITSNITSTIASNITDLPSQQDDDKSGVCSMEKINKPNRCELAEERSFTTYHSSCNAALTSNATIKYKSNPMRSMTLIAENAKEISKRETRNLSGNCNAEKYDEKTDSNASRAQEKNESTILQSTSESVKKGYTCDNCQRVFKRKHHLIRHMTDCKCHDSAKEDLTRMRSKMTEKKKKPDDGTIKKKERLIEDIKSTNDDEESCLSSVKPLKKQFRTYPCSYCEHTAERKKLLKIHLTEAHPEVVNRSRKSFVATETVLRARIEHDGKIYYHCNECGKNLNSPYTFYWHLRIHTGERLFTCHLCGKRFRVNQGLTRHLKNTHAGIKNVPCDLCGRMFSTRRNVEDHRRIHTGERPYVCNICGKTFKQKASLFVHNRTHSDVFPFKCSYCDQTFRTRPPLMVHITKHTGEKPHACDVCGRHFRIKYELKRHRLIHSDEKPWRCTVCSLSFRQKRYLVNHKKLNHEPPRSLAAPQVTG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00417794;
90% Identity: -
80% Identity: -