Basic Information

Insect: Trachymyrmex zeteki
Gene Symbol: -
Assembly: GCA_001594055.1
Location: NW:536319-543565[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.28 18 5.3 0.2 3 17 65 79 63 80 0.86

2 14 5.7 3.8e+02 1.2 0.1 1 23 198 225 198 225 0.84

3 14 0.00022 0.015 15.1 0.2 1 23 230 252 230 252 0.95

4 14 9.8e-06 0.00065 19.3 1.2 1 23 260 282 260 282 0.98

5 14 2e-05 0.0013 18.4 0.4 2 23 290 311 289 311 0.97

6 14 7.6e-07 5e-05 22.8 0.5 1 23 317 339 317 339 0.98

7 14 2.1e-05 0.0014 18.3 2.3 1 23 346 368 346 368 0.98

8 14 1.1e-06 7e-05 22.4 1.2 1 23 374 396 374 396 0.96

9 14 2.6e-06 0.00017 21.1 0.4 1 23 402 424 402 424 0.98

10 14 4.1e-07 2.7e-05 23.7 1.2 1 23 430 453 430 453 0.96

11 14 1.9e-06 0.00013 21.5 0.5 1 23 459 482 459 482 0.96

12 14 1.9e-05 0.0012 18.4 1.5 1 23 488 510 488 510 0.99

13 14 5.3e-05 0.0035 17.0 0.4 1 23 516 538 516 538 0.94

14 14 0.00088 0.058 13.2 0.1 1 23 544 568 544 568 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.28	18	5.3	0.2	3	17	65	79	63	80	0.86
2	14	5.7	3.8e+02	1.2	0.1	1	23	198	225	198	225	0.84
3	14	0.00022	0.015	15.1	0.2	1	23	230	252	230	252	0.95
4	14	9.8e-06	0.00065	19.3	1.2	1	23	260	282	260	282	0.98
5	14	2e-05	0.0013	18.4	0.4	2	23	290	311	289	311	0.97
6	14	7.6e-07	5e-05	22.8	0.5	1	23	317	339	317	339	0.98
7	14	2.1e-05	0.0014	18.3	2.3	1	23	346	368	346	368	0.98
8	14	1.1e-06	7e-05	22.4	1.2	1	23	374	396	374	396	0.96
9	14	2.6e-06	0.00017	21.1	0.4	1	23	402	424	402	424	0.98
10	14	4.1e-07	2.7e-05	23.7	1.2	1	23	430	453	430	453	0.96
11	14	1.9e-06	0.00013	21.5	0.5	1	23	459	482	459	482	0.96
12	14	1.9e-05	0.0012	18.4	1.5	1	23	488	510	488	510	0.99
13	14	5.3e-05	0.0035	17.0	0.4	1	23	516	538	516	538	0.94
14	14	0.00088	0.058	13.2	0.1	1	23	544	568	544	568	0.92

Sequence Information

Coding Sequence: ATGATGGCTGACTTCGATAAAGATTCTATGCAGTGTTGTTTGGTGTGTAACACTAAAATTGGGCTATCTACTAGAAACAGTATACACATCTTTGATGAGTCTTACACCATATCTAAGAAACCACTTGTGGATGTTATATCAGCTGTTTTAGGCACTGATATTAGTCATGACTCTGTGCATTCTCCTATcatttgcaaaaaatgttttaagcaGTTTAATGAGGCGGATGAACTTAAAAGTAAAGTAACGAAACTTAAAACAGAATTATATAACAGCTATAAAAAGACAATTGAAGTTCATAAGTTGTGTGATGTACTTCCAAATGAAGAATATAACGATCATGATTACACAGACAATACAGAAAGTCAATGTACTTTAATAGAGGAAGTGCAGGAAAATGTAGCAGAAGAGGATATGCAAGAaacaaaagaagaagaattaattatagaacAAGATAACTCTTTACATTACTTCACAGAAGTTGAAGAAGAAGATGAAACAAGTAATTCAAATGATACAAAGAAATCAAAGAAGAGTAAAATTAAAGTGGAACAACCTCAAGAAGATATTGTATTTAGAAATGAATCTTCATACACCTGTTTAGTATGTCCAAACGATGAAGAGAAGTTCACGGCAGATGCTAAACTCATTATAACTCACATGAAAGACGTACATGACTTACGTTTGTATATTTGTGATGTATGTGGGCAGGATTTCAGAAAGAGAAACGAACTTTCTACACATCTCGATGATCACATCGCAAAAGAGGAAGGGGACTTTCAATGCGAAATatgtaatagaatatttagtAACTTGCGATTATTCCGTATTCATAAAAGAATACATTATCCGCAAGTAAAATCATGGCCCTGTGAAACATgtggaaaaaaatacaattccaaaaatttattagaggaacatacaaacacacacactGGTGTTCGTCCATACATATGTGAAATCTGTGGCAAGGACTTCGCATCCAAGTATACGTACAAAGCGCACGTAAAAACGCACGAAGTGCGACCTCGTCCATTCGAGTGCACTCAGtgcaataaaacatttttgagCCAGCAAAATTTGAATCAGCATGAACGAACGCATAATGGCACAAAGGAATTTGTATGCCATCAGTGTggtAAAGCTTTTACTTCTGCACATAATTTAGAGGTACATAATATAGTACATACCGGATTTAAACCCTATGACTGTAGTACATGTGGTAAATCGTTTGCGCGTAAAGCGGAAATTCGTGATCACGAGAGAACTCACACAGGTGAGAAACCTTATCAGTGTGAGTTTTGTGGAGCTACATTTAGTCAGAGATCGAATCTGCAATCCCACAAGCGAGCGACGCATTATAATGATAAACGTTATAAGTGTGATGAATGTGGAAAaggttttaaaagaaaaagattattgGATTATCACATAAAAGCGGCGCACACCGGTGAAAGACCGTATAAGTGTGACATATGTGCAGCTACATTTGTATACCCTGAGCACTTTAAGAAACATACACGTATACATACAGGCGAGAAACCATATCTTTGCGAGGTTTGCGGCAAAGCATTTAATAGCAGAGATAACAGAAACGCTCACAGATTTATACATAGCGATAAAAAGCCATATGAATGTTTGGTGTGTGGCGTGGGCTTCATGAGAAAACCATTACTTTACACACACATGCAAGTGCAGggTCATTTAAATGATACTATAGTAGTGAACCAACCACGACTGACAGCGGAAGAAGAGCAAGTAATAACTATTCCCAATAATAATAGCGAACTACTGATGGAAAAAGTTGAGAGTGAAgagCTTGGTGAAACTGGATTATATGTAACCGAACTAAAAGATCACGTAATTATACAAGAAGGGGAAGATCAGATATATAATGAAGAGGatgttgtattaaatataccgGCAGAAGAAACCGTAACCGATGAAGTAAATCATCTTGTTGAAGATCagATAAATTTTGTGGAGAGTGAAGTTACTGCAGACGATTGTAAAGTTGAAACTGAAGTAGAAACAGTATATACTTATAACGAGAATGAAGAAGGCGAGACAATAGTTGTACCATCCGCTTCACAAGGAGAAGATAAGAATGTACGATTAGTGCAGATTAGATTTCCGACTTCTGTAGATGGAGAAGGCAGAAGTTGGTTAAGCTTAGTACAAGATACttga
Protein Sequence: MMADFDKDSMQCCLVCNTKIGLSTRNSIHIFDESYTISKKPLVDVISAVLGTDISHDSVHSPIICKKCFKQFNEADELKSKVTKLKTELYNSYKKTIEVHKLCDVLPNEEYNDHDYTDNTESQCTLIEEVQENVAEEDMQETKEEELIIEQDNSLHYFTEVEEEDETSNSNDTKKSKKSKIKVEQPQEDIVFRNESSYTCLVCPNDEEKFTADAKLIITHMKDVHDLRLYICDVCGQDFRKRNELSTHLDDHIAKEEGDFQCEICNRIFSNLRLFRIHKRIHYPQVKSWPCETCGKKYNSKNLLEEHTNTHTGVRPYICEICGKDFASKYTYKAHVKTHEVRPRPFECTQCNKTFLSQQNLNQHERTHNGTKEFVCHQCGKAFTSAHNLEVHNIVHTGFKPYDCSTCGKSFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDECGKGFKRKRLLDYHIKAAHTGERPYKCDICAATFVYPEHFKKHTRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGVGFMRKPLLYTHMQVQGHLNDTIVVNQPRLTAEEEQVITIPNNNSELLMEKVESEELGETGLYVTELKDHVIIQEGEDQIYNEEDVVLNIPAEETVTDEVNHLVEDQINFVESEVTADDCKVETEVETVYTYNENEEGETIVVPSASQGEDKNVRLVQIRFPTSVDGEGRSWLSLVQDT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01476422;
90% Identity: iTF_00417759;
80% Identity: -