Basic Information

Insect: Trachymyrmex zeteki
Gene Symbol: -
Assembly: GCA_001594055.1
Location: NW:940372-955789[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 3.7e-05 0.0024 17.5 1.4 1 23 458 480 458 480 0.96

2 18 1.3e-05 0.00087 18.9 1.9 1 20 486 505 486 508 0.94

3 18 9.2e-06 0.0006 19.4 1.4 1 23 514 536 514 536 0.98

4 18 5.3e-05 0.0035 17.0 4.4 1 21 542 562 542 564 0.95

5 18 7.2e-06 0.00047 19.7 5.6 1 23 570 592 570 592 0.99

6 18 1.6e-05 0.0011 18.6 5.3 1 23 598 620 598 620 0.97

7 18 6.2e-05 0.0041 16.8 6.9 1 23 626 648 626 648 0.96

8 18 6.1e-08 4e-06 26.3 2.7 1 23 654 676 654 676 0.98

9 18 4.5e-05 0.003 17.2 6.7 1 23 682 704 682 704 0.97

10 18 1.4e-05 0.00092 18.8 5.8 1 23 710 732 710 732 0.98

11 18 2.9e-07 1.9e-05 24.1 2.8 1 23 738 760 738 760 0.98

12 18 5.5e-06 0.00036 20.1 7.8 1 23 766 788 766 788 0.98

13 18 1.7e-05 0.0011 18.5 9.1 1 23 794 816 794 816 0.98

14 18 2.3e-05 0.0015 18.2 7.5 1 23 822 844 822 844 0.98

15 18 0.0011 0.072 12.9 8.8 1 21 850 870 850 872 0.94

16 18 8.4e-06 0.00055 19.5 0.4 1 23 878 900 878 900 0.98

17 18 0.02 1.3 8.9 4.5 1 23 910 932 910 932 0.98

18 18 3.2e-07 2.1e-05 24.0 1.3 1 23 938 960 938 960 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	3.7e-05	0.0024	17.5	1.4	1	23	458	480	458	480	0.96
2	18	1.3e-05	0.00087	18.9	1.9	1	20	486	505	486	508	0.94
3	18	9.2e-06	0.0006	19.4	1.4	1	23	514	536	514	536	0.98
4	18	5.3e-05	0.0035	17.0	4.4	1	21	542	562	542	564	0.95
5	18	7.2e-06	0.00047	19.7	5.6	1	23	570	592	570	592	0.99
6	18	1.6e-05	0.0011	18.6	5.3	1	23	598	620	598	620	0.97
7	18	6.2e-05	0.0041	16.8	6.9	1	23	626	648	626	648	0.96
8	18	6.1e-08	4e-06	26.3	2.7	1	23	654	676	654	676	0.98
9	18	4.5e-05	0.003	17.2	6.7	1	23	682	704	682	704	0.97
10	18	1.4e-05	0.00092	18.8	5.8	1	23	710	732	710	732	0.98
11	18	2.9e-07	1.9e-05	24.1	2.8	1	23	738	760	738	760	0.98
12	18	5.5e-06	0.00036	20.1	7.8	1	23	766	788	766	788	0.98
13	18	1.7e-05	0.0011	18.5	9.1	1	23	794	816	794	816	0.98
14	18	2.3e-05	0.0015	18.2	7.5	1	23	822	844	822	844	0.98
15	18	0.0011	0.072	12.9	8.8	1	21	850	870	850	872	0.94
16	18	8.4e-06	0.00055	19.5	0.4	1	23	878	900	878	900	0.98
17	18	0.02	1.3	8.9	4.5	1	23	910	932	910	932	0.98
18	18	3.2e-07	2.1e-05	24.0	1.3	1	23	938	960	938	960	0.97

Sequence Information

Coding Sequence: ATGAATAGTGAGCAGCATGCATTGCCAGCGACTACGCAGGCACAACAAGAGGATGTAAACGCGGGTCAAAGTGGTCGTCCTTCATACCCAGGTGGTTTGGCTACTGCGACCGCGAGTCTTGGCAATGTAGGGAGTACTCCCCATTCATCCGCGGACCTGCGTGTAGGTACTGCCGTAGCGTTAGCCTCCTCGGTAGCCTCCTCGGTAGCTAAGTATTGGGTCCTCACCAATCTGTTTTCTCCCGGACCGCTACCTCAAGTTTCGGTCTACCACCATTCCCACCACAACTCCTCGCATAGGAGTGGTGGCGGTGGGGAGGCATCATCCTCCAAAGAACCAGCCTCTTCACTGAACCAGGAAATGGCGTTGACTTCCAGCTCGCACCATCAACAACAGTCAACAGCCGCGCATCATCATCAACCTTCAGttagcagcagcagcagccaTCACAGTTCTCTGCAGTCGAATCCACAGATTCCTGTGTCTCTTCCCGGCCTTAATTTAGACGGCGCACATCTACCAACGAGTGTTAGTCATCTGGCTGCACATGCACAAATGCAACAACAAATGCAGGCGCAAGCACAGCAGCAGCTGCatcagcagcaacagcagcaaccgccgcagcaacagcagcagcagcagcagtcTCATCATCAGATACCGAATCATCAGAACGCTCAGAACAATGGGCCAACGGCGCACGGTCAGAACGCGCAACGAGACGACAACAAAGTCAAGGACGAAGGCGGTAGTTGCACCACCGAGCGCTGCAGTGACAATCAGGTTCATTGTCAAGTTCAATGCGATCTGCAATTACAACCACCCCAAGACCTTCAACAGAGTTTGatgcaacagcagcagcagcagcagcaacaacagcaacagcagatTGGGGTCAACATCAGCGGTAACTCCACCACCGAGGGGGGAAGCCAAAACAACTCTGAGAAACCGGAAAAAGAGAAGGAATTGCGGCAATTGAATATGACCCAATTTCAAGTCCCTGACTTGAAACCTGGAGGGCACATGATGGACGTGAGGACAGCAGACGGATCGGTTGTTAAAATTAGCGCAGGAAATGAGCAAGATTTAGCTAAGACTCTTGGCGTCGAAATGGTACAAAATATGTACAAGGTTAATGTTGAAGATATTAATCAACTCTTGGCGTATCATGAAGTCTTTGGAAAGCTGCAAAGCGAAATTGCAGCTGGAACGACTTTAGTAGGTAGCACTGTGCCTACACAAACAGTTACCACAATACAAAATGGCACGCCAATCGTGCAGCAGGTCCAACTAAACAAATTCGACATAAAGTCAAGCGACGGCGAAGCAACGCCGGGCCCGAGCGCATCGCCCGTGTCGGTAGGCAGCCACGCTTGTGAGATATGCGGAAAGATCTTCCAATTTCGTTATCAGCTCATTGTACATCGCAGATATCATACTGAGAGGAAACCATTCACATGTCAGGTATGCGGCAAAGCGTTCTCGAATGCAAACGATTTGACACGTCACGGCAAATGTCATCTGGGTGGATCCATGTTTACCTGTACTGTTTGCTTTCACGTCTTTGCGAATGCGCCTTCACTAGAACGTCACATGAAGAGACATGCTACCGACAAACCATACAATTGTACGGTCTGCGGCAAAAGTTTCGCGCGCAAAGAACATTTGGATAACCATACAAGATGTCATACTGGCGAGACGCCGTATAGATGCCAATACTGTTCGAAGACATTTACTCGAAAAGAACATATGGTAAATCATGTTCGCAAACATACTGGTGAGACTCCACATCGATGTGATATTTGCAAGAAGAGCTTTACTCGCAAAGAACACTTTATGAACCATGTTATGTGGCATACAGGAGAAACTCCTCATCATTGTCAAGCTTGCGGCAAGAAGTATACACGCAAAGAGCATCTCGCTAACCATATGCGCTCACACACAAACGACACACCGTTTCGTTGTGAAATATGTGGTAAGTCGTTTACGAGGAAGGAGCACTTCACGAACCACATAATGTGGCATACGGGCGAGACGCCGCACCGCTGTGACTTCTGCTCGAAGACGTTCACGCGAAAGGAACATCTCCTGAACCACGTTCGCCAGCACACGGGTGAGTCTCCACACCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGGGGAGACGCCCTTCCGCTGTTCGTACTGTCCGAAAGCATTTACGCGGAAGGATCACCTGGTGAACCACGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCCTTCACGCGGAAGGAACATTTGACCAATCACGTGCGTCAACACACAGGCGAATCGCCACACCGATGCCACTTCTGCTCCAAGTCATTTACTCGTAAGGAGCATTTAACGAATCATGTGCGCATCCACACTGGCGAATCTCCACATAGGTGTGAGTTTTGCCAAAGGACGTTCACTAGGAAAGAACATCTAAATAACCATCTCCGTCAACATACCGGAGATTCCTCCCACTGTTGCAACGTGTGCTCTAAACCATTCACAAGAAAGGAACATCTCGTGAATCATATGCGTTGCCATACTGGTGAACGTCCATTCGTGTGCACAGAATGTGGCAAGAGTTTTCCACTGAAGGGCAATCTGCTCTTTCATATGCGCTCGCACAACAAGGGCAGCAATGCCGAGAGACCATTTCGCTGCGATCTGTGCCCTAAAGATTTCATGTGCAAAGGACACTTGGTCTCGCATCGGCGCTCGCATTCAGACGAACGGCCGCACAGTTGTCCGGATTGTGGGAAGACCTTTGTTGAGAAGGGCAATATGCTACGACATTTGCGCAAGCACGCGGCTGAAGGCCCGCCGACACAAGTTAGCACACCATCAGCTATACCGCAATCCGGTGTACTGCCGATACCGGCAGCGGCGGCAGTTCTAGTCGGGCATCCCTTAGCACCGCCGGCACCGCCTGTGGTGCCGCAACACACGGTGGTTGTGCCGACACCGCCCGGTGTATTAACATCGTATTAG
Protein Sequence: MNSEQHALPATTQAQQEDVNAGQSGRPSYPGGLATATASLGNVGSTPHSSADLRVGTAVALASSVASSVAKYWVLTNLFSPGPLPQVSVYHHSHHNSSHRSGGGGEASSSKEPASSLNQEMALTSSSHHQQQSTAAHHHQPSVSSSSSHHSSLQSNPQIPVSLPGLNLDGAHLPTSVSHLAAHAQMQQQMQAQAQQQLHQQQQQQPPQQQQQQQQSHHQIPNHQNAQNNGPTAHGQNAQRDDNKVKDEGGSCTTERCSDNQVHCQVQCDLQLQPPQDLQQSLMQQQQQQQQQQQQQIGVNISGNSTTEGGSQNNSEKPEKEKELRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGSTVPTQTVTTIQNGTPIVQQVQLNKFDIKSSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFSNANDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCSYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSAIPQSGVLPIPAAAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00899003;
90% Identity: iTF_00014883;
80% Identity: -