Tzet004267.1
Basic Information
- Insect
- Trachymyrmex zeteki
- Gene Symbol
- bab1
- Assembly
- GCA_001594055.1
- Location
- NW:389264-395121[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-18 2.1e-15 55.4 0.0 1 43 28 71 28 73 0.95 2 2 0.064 63 2.7 1.0 6 18 151 163 149 164 0.91
Sequence Information
- Coding Sequence
- ATGTGGCAGAAGTGCTGGAACACCAACCAGAGTCTGGTGCACAATCTACGCTTCCGGGAACGTGGACCCCTTAAGTCTTGGCGACCAGAGACTATGGCGGAGGCGATCTTCAGCGTGCTGAAGGAAGGACTCTCCCTCAGCCAAGCGGCAAGGAAATACGATATCCCCTACCCGACGTTTGTCCTGTACGCGAATCGAGTACACAACATGCTAGGTCCTAGCGCTGACGGCGGGGCCGATTTGCGCCCGAAGGGACGAGGACGACCGCAGAGGATTCTGCTGGGTGTCTGGCCAGACGAGCATATCCGCGGTGTGATTCGCGCGGTGGTATTCCGCGACGGGCACTCGCCACACATCGTTAAGGAGGAGCCGACCACGATGTACCCCAGCCTGGCGAACTACGCGGCTTGCAATGGCCCGGAAGGCGCAGTCAGCCCGGGTGCGGCAGCTGCGGCTGCGGTCGCAGCGGTCGCTCAAGggactctgtcccacgattataTTAAGTGA
- Protein Sequence
- MWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDGHSPHIVKEEPTTMYPSLANYAACNGPEGAVSPGAAAAAAVAAVAQGTLSHDYIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00676605; iTF_00738990;
- 90% Identity
- iTF_00676605;
- 80% Identity
- -