Basic Information

Insect: Trachymyrmex septentrionalis
Gene Symbol: -
Assembly: GCA_001594115.1
Location: NW:594804-600341[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.12 7.7 6.5 4.5 1 23 406 428 406 428 0.98

2 10 0.45 28 4.7 3.6 1 21 434 454 434 457 0.96

3 10 0.00015 0.0092 15.7 0.6 2 19 464 481 463 485 0.89

4 10 8.9e-05 0.0057 16.3 4.5 1 23 491 513 491 513 0.98

5 10 0.00087 0.055 13.2 0.1 3 23 521 542 519 542 0.93

6 10 0.12 7.6 6.5 1.8 1 23 549 572 549 572 0.98

7 10 4.8e-06 0.0003 20.3 0.8 1 23 576 598 576 598 0.97

8 10 0.00066 0.042 13.6 0.5 1 23 604 626 604 626 0.98

9 10 1.1e-05 0.0007 19.2 1.3 1 23 632 654 632 654 0.96

10 10 7.7e-07 4.8e-05 22.8 2.8 1 23 659 681 659 681 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.12	7.7	6.5	4.5	1	23	406	428	406	428	0.98
2	10	0.45	28	4.7	3.6	1	21	434	454	434	457	0.96
3	10	0.00015	0.0092	15.7	0.6	2	19	464	481	463	485	0.89
4	10	8.9e-05	0.0057	16.3	4.5	1	23	491	513	491	513	0.98
5	10	0.00087	0.055	13.2	0.1	3	23	521	542	519	542	0.93
6	10	0.12	7.6	6.5	1.8	1	23	549	572	549	572	0.98
7	10	4.8e-06	0.0003	20.3	0.8	1	23	576	598	576	598	0.97
8	10	0.00066	0.042	13.6	0.5	1	23	604	626	604	626	0.98
9	10	1.1e-05	0.0007	19.2	1.3	1	23	632	654	632	654	0.96
10	10	7.7e-07	4.8e-05	22.8	2.8	1	23	659	681	659	681	0.96

Sequence Information

Coding Sequence: ATGGATGTGGTGGAAGAGGGGGAGGCGAAAATGTGCAGGCTTTGCGGCCAGTACGAGAAAATTTACATCGATGTTTTTGGCGAGGAAGGTATCAAACGTTACCTTGGTCTCAAGATTCACaggaaaattaatatcttgATAGATGAAAAGGATCCTCTTCCCAAAGCGATCTGTGTTCAGTGTCTAGGTAAACTTGAATTTGTTTGTGATTTTCAAGAGGAATGTCTGCGCACCCAACAGGTGTTACGTGATCAATACAATCTTCCACCATTAACTGAATCTACAGaggtaaaaaatgaagaatcaGCATTGCTGGTGGGTACATCATCATCAGATAATAACAACAGTATTGAAAAAGATCTTAATTCTACTAGAAACAATCAAACCGAAGACATAGTCAAGGATCCAGTGGAacaacagaaaaaaagaaatacttcCTCGAAGATTATAAGGAGTCTTCGTAGTCAACAACAGCAACAAGTTTCCAAGTGCAATGATGAAAATGCAGGAAAAAATGTACAGACTCAAGGTACAGAATCATCACCGACTCGTTGGCTTAGAAGCAGGCAAAGCGCAGATTCATCTGTGGTGGACAACGAAAAGATTCCGATTGCAAATAGATTAAGGAGTCACAACAATGTGGAAACTAACATCAATAATCGTTCTGtgaatactaataataataataataataatagcaataatgAGAATACAGAAAAACAATGTACgaagcagcagcaacaacaggaacaggaTTCATCGGTGACGATTCAGTTACCGACTACagctttgaataaattattgacgATTGTTTCTAGCTCTCCTGATATCGACGTTTCTGTAAAGGAGACAAGAAATCGGAGTAATGATGCCGAAGATATTAGCTTTACTGTGGAACTGTGTAAGAAACAAAATGATGAGGTATCGACGGTGCGAGCACGGGTTTTCCCTGATCAGGGCTACTGTCTAGTCGATACAGCAATCGTACCTTTGTTGCAAAGCGAAAACAGAACAGAAGTGAACAGTATTGTCAATAGCATTCTTAGCAATACGTCGTCGAAAAACAATAGTCCTGTGGCAAAGTTGAAAGATTTAGCGGAGTTGGAACAGCAATTGGAAGCGACACAGAATCCAGAAGAGCTCTTTAAAATTGATGGCGAGGAGATTAAGGTAGATGATAATGTGGAGCACGTGGTAAATGGAACACAGAATGGTTATGCATGCAAACTCTGTCGAAAATTCTATGAACGCCGAGATAAGTGTACAGTTCATGTGAAGACACACCTCGGTATCAAGCAATATACATGCGTCGTCTGCAACGCCAAATTTGTTTGCAAATCTGATGTGATGAAGCACATTCGATGCTCGCATACTAATCCCAGACCCATACAATGTCCCAAATGTCCTAAACGATTCAAATCCAAATTTTATCTAGCTGAACATGACAATGTTCATAAGGGTATACGACCATACAGTTGTACAGACTGTGAACAGAGTTATCATCACAAGGTTTCATTACAGATCCATATGAAGTCGCATTTACCACCTCAAAATCTAGCCTGCGAATATTGTGGCAAAGTCTTCCCGTTTCGCACGCGATTACTCGGTCATATCGCAAGTGTTCATATGAAAAAACGACGTAATTTTCGTTGTCGCTTTTGTTATAATCTTTACTCGAGTCTATCGGTGCTAAACGAACATATCAAAACTCGCCATGCGACCACATATACGTGTGAGACATGTGGTAAGACTTTTAAAGTTGCTTCCAAGTATAAAGCGCATGTACTGCAGCACTCCAACCCTAAGCCGTTTGTGTGCAATGTTTGCAATAATCGTTATGCTTCTAAAGCGTTTCTCAATGAGCATTTGTTAAAGCATGAGGGTTTACGTAAACACATATGCCAAGAATGCGGCGCGAGTTTTGCACAAGCGAGTCATTTGGCTGCTCATCGTCATGTACATGGAGAAAAGACGCACGCGTGTCCGGAATgcggtaaaaaatttaatcgtcGTGACAATATGAAAGTGCATCGTAAACGGCATTTCGATGAGAAAAAGACTAGCATAGCTAGCAAACAGAAAGTTACATCCAACAATAATAACGTAACTGCTCTTACTACATCTGTTAACGAGAAGTAA
Protein Sequence: MDVVEEGEAKMCRLCGQYEKIYIDVFGEEGIKRYLGLKIHRKINILIDEKDPLPKAICVQCLGKLEFVCDFQEECLRTQQVLRDQYNLPPLTESTEVKNEESALLVGTSSSDNNNSIEKDLNSTRNNQTEDIVKDPVEQQKKRNTSSKIIRSLRSQQQQQVSKCNDENAGKNVQTQGTESSPTRWLRSRQSADSSVVDNEKIPIANRLRSHNNVETNINNRSVNTNNNNNNNSNNENTEKQCTKQQQQQEQDSSVTIQLPTTALNKLLTIVSSSPDIDVSVKETRNRSNDAEDISFTVELCKKQNDEVSTVRARVFPDQGYCLVDTAIVPLLQSENRTEVNSIVNSILSNTSSKNNSPVAKLKDLAELEQQLEATQNPEELFKIDGEEIKVDDNVEHVVNGTQNGYACKLCRKFYERRDKCTVHVKTHLGIKQYTCVVCNAKFVCKSDVMKHIRCSHTNPRPIQCPKCPKRFKSKFYLAEHDNVHKGIRPYSCTDCEQSYHHKVSLQIHMKSHLPPQNLACEYCGKVFPFRTRLLGHIASVHMKKRRNFRCRFCYNLYSSLSVLNEHIKTRHATTYTCETCGKTFKVASKYKAHVLQHSNPKPFVCNVCNNRYASKAFLNEHLLKHEGLRKHICQECGASFAQASHLAAHRHVHGEKTHACPECGKKFNRRDNMKVHRKRHFDEKKTSIASKQKVTSNNNNVTALTTSVNEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01523594;
90% Identity: iTF_01476476;
80% Identity: -