Basic Information

Insect: Trachymyrmex septentrionalis
Gene Symbol: -
Assembly: GCA_001594115.1
Location: NW:2346405-2352486[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.22 14 5.7 0.4 1 21 353 373 353 376 0.88

2 10 0.00066 0.042 13.6 3.0 1 23 383 405 383 405 0.97

3 10 0.00088 0.055 13.2 5.2 1 20 411 430 411 433 0.95

4 10 0.0011 0.072 12.9 5.4 1 23 439 461 439 461 0.97

5 10 4.3e-05 0.0027 17.3 2.8 1 23 467 489 467 489 0.97

6 10 5.8e-08 3.7e-06 26.4 0.9 1 23 500 522 500 522 0.98

7 10 1.2e-06 7.7e-05 22.2 2.9 1 23 528 550 528 550 0.98

8 10 1.1e-06 7e-05 22.3 0.6 1 23 556 578 556 578 0.97

9 10 1.3e-06 8e-05 22.2 0.6 1 23 584 606 584 606 0.95

10 10 8.7e-07 5.5e-05 22.7 0.3 1 23 612 634 612 634 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.22	14	5.7	0.4	1	21	353	373	353	376	0.88
2	10	0.00066	0.042	13.6	3.0	1	23	383	405	383	405	0.97
3	10	0.00088	0.055	13.2	5.2	1	20	411	430	411	433	0.95
4	10	0.0011	0.072	12.9	5.4	1	23	439	461	439	461	0.97
5	10	4.3e-05	0.0027	17.3	2.8	1	23	467	489	467	489	0.97
6	10	5.8e-08	3.7e-06	26.4	0.9	1	23	500	522	500	522	0.98
7	10	1.2e-06	7.7e-05	22.2	2.9	1	23	528	550	528	550	0.98
8	10	1.1e-06	7e-05	22.3	0.6	1	23	556	578	556	578	0.97
9	10	1.3e-06	8e-05	22.2	0.6	1	23	584	606	584	606	0.95
10	10	8.7e-07	5.5e-05	22.7	0.3	1	23	612	634	612	634	0.98

Sequence Information

Coding Sequence: atgatGTCGGAAAGCGCGAATTCGGAGGTTGATTCCTACATGTATAAATGTCGCGCGTGCATGAAGGAAGGCTGCAAAATGCTGCCCATGTATGATGATAACGTTAGCGAGATCAATTTGCCGTACAAGCTCGCGCAGATCACGTCTATCAAGaTTGATCAATTTGATGGACTGCCTAACATGCTCTGTCCAAAGTGTGCATATCGAACAAATGCTTTATATGACTTTAGATTACAAGTGCAAGAATCGgacaagaaatttagaatgaTGCAAGAAACTAAAATGAACATTGTAAAGgcaGATgccaagaaagaaaaaagtgatGTACAAAAAGATGGatttttggaattaaatatatcaggCGATGTAAAGTCTGATCGTACTTTTGAATttgtaaacattaaaataacagaTGATATGGATCAACAACAATATGAAATTGATGTATCTCAGTTGATTAAAGATAATGGAGATGGTAAAGAGAACTCACAGTTGAatgatgtttattataatatcgaaACTAACGAGGATCAAATAAGTACCCAGTTGATGAAAACTGAGTTACCTgaagatatttcaaaaatatttgcagaaaATGTCGCAATTATGTATATACCAAAATCTACGATTGAATCGATGTCAGTCGAGAACACGTTAACGCTTGATCCGGAACAAGAAGAAATAGTAAATGACAATGGTACATTTATCTCTGAAGTGGAAATCTTGACTGAAGAAAATGAAGAAGCCTCAAGCAAAATATGCGTTTCCAGTCCTGTGGAATCTAATGcaactaaaaagaataaatgtacCTATTTGGAACAACAAGATGTAACATCAGTAATACAAGTGgagaaacaaaaagaatataatgagATGATACAAAACatagataaagaaataaagctTAATGAGAGTAATTCTAATATTGAATTCTTAGTAGAAAACAACGATGGATCTGATTCTGACTACTTTGTTGATGATAAAGACAATATATTAGGCAGTTTGAGCGATGCAATTATACGGATAAAGGAATTCAAACGAGAAAATGGTATCGAATATCAATGCACGTTATGTTTACAGAATTTTAATCAACTGACTAGTGTATTATTGCATACTGTCGAGAATCATGTCCCTTCCAACGGTCCGTTCTTTTGCATGGTGTGTGAAAAGGATTGCAAAAATCGTCGAGAGCTGCGAGCACACGTGAAAACGCATACTGGCGAATCTCCATATTCCTGCTTCCTTTGTAAAAAGgcatataatagaaaaagatatcTGAAGAGACACATGGCATGCCATCCCAACTTTTCACGGCACCGCTGCCTGAAGTGTGGTTGCCGCTTTAAATCAAAATCAGAATTAGACAGCCATGCGACAACACATGATCTCGTCGCACCCTACGCTTGCAGTCAATGTTCGCGTATATTTAATCACAAAGGCAATTACAAACGGCATCTGATCAGCCATTTGGATCCGCAGGGTCTTCATTTGCCTAAATATCCGTGCAATTACTGTGACAAACGTTTTCCTAACAATCGTACACTCCAAACGCATATACGGGTACATACTGGTGAAAAACCGTTCAAGTGTGATGTTTGTCATAAGTCATTCTCTCAACGAGGCAACTTATTGAACCATTCAAAGATACATTGGAATCCTCGCAGCTTCACATGCGAAGTCTGTGGCAAAAGcTTCAATCAACGTGCTACATTACGAGATCACACATTATTGCACACTGGTGAGAAGCCTCACATATGTAATGTATGTGGGAAAGCATTTACGGTTAGTGCAGCGTTGAGAAGGCATATGTTCAATCACGTTGAAGTCAGGCCATTCAATTGTGATAATTGTGGTATGGGATTCATCGGTAAATACGATTTACGACGACATATGCGAGTGCATGAGAACCGACCTAAGGAAAAGcgtaaaaaaaacacaaaaacaactaATGTTCTTCAGCAAAAATCGGAGGAAAGTCATGTTACGTTGGAAGAATCGAAAACTGAGACTGCGCTCATAGAAATAGAAGAAGGATTTTTATCACAAAACATTATACAGACCATACCACAAATCGAATCAGAAAAGGAAAATGAGGATGcactatttaataatcttcaaTCTTATTCAGTTATATACAGTACAACTGAAGATAGATCATAG
Protein Sequence: MMSESANSEVDSYMYKCRACMKEGCKMLPMYDDNVSEINLPYKLAQITSIKIDQFDGLPNMLCPKCAYRTNALYDFRLQVQESDKKFRMMQETKMNIVKADAKKEKSDVQKDGFLELNISGDVKSDRTFEFVNIKITDDMDQQQYEIDVSQLIKDNGDGKENSQLNDVYYNIETNEDQISTQLMKTELPEDISKIFAENVAIMYIPKSTIESMSVENTLTLDPEQEEIVNDNGTFISEVEILTEENEEASSKICVSSPVESNATKKNKCTYLEQQDVTSVIQVEKQKEYNEMIQNIDKEIKLNESNSNIEFLVENNDGSDSDYFVDDKDNILGSLSDAIIRIKEFKRENGIEYQCTLCLQNFNQLTSVLLHTVENHVPSNGPFFCMVCEKDCKNRRELRAHVKTHTGESPYSCFLCKKAYNRKRYLKRHMACHPNFSRHRCLKCGCRFKSKSELDSHATTHDLVAPYACSQCSRIFNHKGNYKRHLISHLDPQGLHLPKYPCNYCDKRFPNNRTLQTHIRVHTGEKPFKCDVCHKSFSQRGNLLNHSKIHWNPRSFTCEVCGKSFNQRATLRDHTLLHTGEKPHICNVCGKAFTVSAALRRHMFNHVEVRPFNCDNCGMGFIGKYDLRRHMRVHENRPKEKRKKNTKTTNVLQQKSEESHVTLEESKTETALIEIEEGFLSQNIIQTIPQIESEKENEDALFNNLQSYSVIYSTTEDRS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01477809;
90% Identity: iTF_00015559;
80% Identity: -