Basic Information

Insect: Trachymyrmex septentrionalis
Gene Symbol: -
Assembly: GCA_001594115.1
Location: NW:1023408-1039715[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 3.8e-05 0.0024 17.5 1.4 1 23 462 484 462 484 0.96

2 18 1.4e-05 0.00086 18.9 1.9 1 20 490 509 490 512 0.94

3 18 9.4e-06 0.0006 19.4 1.4 1 23 518 540 518 540 0.98

4 18 5.5e-05 0.0035 17.0 4.4 1 21 546 566 546 568 0.95

5 18 7.4e-06 0.00047 19.7 5.6 1 23 574 596 574 596 0.99

6 18 1.7e-05 0.0011 18.6 5.3 1 23 602 624 602 624 0.97

7 18 6.4e-05 0.004 16.8 6.9 1 23 630 652 630 652 0.96

8 18 6.3e-08 4e-06 26.3 2.7 1 23 658 680 658 680 0.98

9 18 4.6e-05 0.0029 17.2 6.7 1 23 686 708 686 708 0.97

10 18 1.4e-05 0.00091 18.8 5.8 1 23 714 736 714 736 0.98

11 18 3e-07 1.9e-05 24.1 2.8 1 23 742 764 742 764 0.98

12 18 5.7e-06 0.00036 20.1 7.8 1 23 770 792 770 792 0.98

13 18 1.8e-05 0.0011 18.5 9.1 1 23 798 820 798 820 0.98

14 18 2.3e-05 0.0015 18.2 7.5 1 23 826 848 826 848 0.98

15 18 0.0011 0.071 12.9 8.8 1 21 854 874 854 876 0.94

16 18 8.6e-06 0.00054 19.5 0.4 1 23 882 904 882 904 0.98

17 18 0.021 1.3 8.9 4.5 1 23 914 936 914 936 0.98

18 18 3.3e-07 2.1e-05 24.0 1.3 1 23 942 964 942 964 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	3.8e-05	0.0024	17.5	1.4	1	23	462	484	462	484	0.96
2	18	1.4e-05	0.00086	18.9	1.9	1	20	490	509	490	512	0.94
3	18	9.4e-06	0.0006	19.4	1.4	1	23	518	540	518	540	0.98
4	18	5.5e-05	0.0035	17.0	4.4	1	21	546	566	546	568	0.95
5	18	7.4e-06	0.00047	19.7	5.6	1	23	574	596	574	596	0.99
6	18	1.7e-05	0.0011	18.6	5.3	1	23	602	624	602	624	0.97
7	18	6.4e-05	0.004	16.8	6.9	1	23	630	652	630	652	0.96
8	18	6.3e-08	4e-06	26.3	2.7	1	23	658	680	658	680	0.98
9	18	4.6e-05	0.0029	17.2	6.7	1	23	686	708	686	708	0.97
10	18	1.4e-05	0.00091	18.8	5.8	1	23	714	736	714	736	0.98
11	18	3e-07	1.9e-05	24.1	2.8	1	23	742	764	742	764	0.98
12	18	5.7e-06	0.00036	20.1	7.8	1	23	770	792	770	792	0.98
13	18	1.8e-05	0.0011	18.5	9.1	1	23	798	820	798	820	0.98
14	18	2.3e-05	0.0015	18.2	7.5	1	23	826	848	826	848	0.98
15	18	0.0011	0.071	12.9	8.8	1	21	854	874	854	876	0.94
16	18	8.6e-06	0.00054	19.5	0.4	1	23	882	904	882	904	0.98
17	18	0.021	1.3	8.9	4.5	1	23	914	936	914	936	0.98
18	18	3.3e-07	2.1e-05	24.0	1.3	1	23	942	964	942	964	0.97

Sequence Information

Coding Sequence: ATGAATAGTGAGCAGCATGCATTGCCAGCGACTACGCAGGCACAACAAGAGGATGTAAACGCGGGTCAAAGTGGTCGTCCTTCATACCCAGGTGGTTTGGCTACTGCGACCGCGAGTCTTGGCAATGTAGGGAGTACTCCCCATTCATCCGCGGACCTGCGTGTAGGTACTGCCGTAGCGTTAGCCTCCTCGGTAGCCTCCTCGGTAGCTAAGTATTGGGTCCTCACCAATCTGTTTTCTCCCGGACCGCTACCTCAAGTTTCGGTCTATCACCATTCCCACCACAACTCCTCGCATAGGAGTGGTGGCAGTGGGGAGACATCATCCTCCAAAGAGCCAGCCTCTTCACTGAACCAGGAAATGGCGTTGACTTCCAGCTCGCACCATCAACAACAGTCAACAGCCGCGCATCATCATCAGCCTTCAGttagcagcagcagcagccaCCACAGTTCTCTGCAGTCGAATCCACAGATTCCTGTGTCTCTTCCCGGCCTTAATTTAGACGGCGCACATCTCCCAGCGAGTGTTAGTCATCTGGCTGCACATGCACAAATGCAACAAATGCAGGCGCAAGCACAGCAGCAGCTGCatcagcagcaacagcagcaaccgccgcaacagcagcagcagcagcagcagcagtctCATCATCAAATACCGAATCATCAGAACGCTCAGAACAATGGGCCAACGGCGCATGGCCAGAACGCGCAACGAGACGACAACAAAGTCAAGGACGAGGGCGGTAGTTGCACCACCGAGCGCTGCAGCGACAATCAGGTTCATTGTCAAGTTCAATGTGATCTGCAATTACAACCACCCCAAGATCTTCAACAGAGCTTGatgcaacagcagcagcagcagcagcagcaacagcagcaacaacagcaacagcagatTGGGGTCAACATCAGCGGTAACTCCACCACCGAGGGGGGAAACCAGAACAACTCCGAGAAACCCGAAAAAGAGAAGGAATTGCGGCAATTGAATATGACCCAATTTCAAGTCCCTGACTTGAAACCTGGAGGGCACATGATGGATGTGAGGACAGCAGATGGATCAGTTGTCAAAATTAGCGCAGGAAACGAGCAAGATTTAGCTAAGACTCTTGGCGTCGAAATGgtacaaaatatgtacaagGTTAATGTTGAAGATATTAATCAACTCTTGGCGTATCATGAAGTTTTTGGAAAGCTGCAGAGTGAAATTGCAGCTGGAACGACTTTAGTAGGTAGCACTGTGCCTACGCAAACAGTTACCACGATACAAAATGGCACACCAATCGTGCAGCAGGTCCAATTGAACAAATTTGACATAAAGTCAAGCGACGGCGAAGCGACACCGGGCCCAAGCGCATCGCCTGTGTCGGTAGGCAGTCACGCTTGTGAGATATGCGGAAAGATCTTCCAATTTCGTTATCAACTCATTGTACATCGCAGATATCATACTGAGAGGAAACCATTCACATGTCAGGTATGCGGCAAAGCGTTCTCGAATGCAAACGATTTGACACGTCACGGCAAATGTCACCTGGGTGGATCCATGTTTACCTGTACTGTTTGCTTTCACGTCTTTGCGAATGCGCCTTCACTAGAACGTCACATGAAGAGACATGCTACCGATAAACCATACAATTGTACGGTCTGCGGTAAAAGTTTCGCGCGCAAAGAGCATTTAGATAACCACACAAGATGTCATACTGGCGAGACGCCGTATAGATGCCAATACTGTTCGAAGACATTTACTCGAAAAGAACATATGGTAAATCATGTTCGCAAACATACTGGTGAGACTCCACATCGATGTGATATTTGCAAGAAGAGCTTTACTCGCAAAGAACACTTTATGAATCATGTTATGTGGCATACAGGAGAAACTCCTCATCATTGTCAAGCTTGCGGCAAGAAATATACACGCAAAGAGCATCTCGCTAACCATATGCGCTCACACACAAACGATACACCGTTTCGTTGTGAAATATGTGGTAAGTCGTTTACGAGGAAGGAGCACTTCACGAACCACATAATGTGGCATACGGGTGAGACGCCGCACCGCTGTGATTTCTGCTCGAAGACGTTCACGCGAAAGGAACATCTCCTGAACCACGTTCGCCAGCACACGGGTGAGTCTCCACACCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGGGGAGACGCCCTTCCGCTGTTCATACTGTCCGAAAGCATTTACGCGGAAGGATCACCTGGTGAACCACGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCCTTCACGCGGAAGGAACATTTGACCAATCACGTGCGTCAACACACAGGCGAATCGCCACACCGATGCCACTTCTGCTCCAAGTCATTTACTCGTAAGGAGCATTTAACGAATCATGTGCGCATCCACACTGGCGAATCTCCACATAGGTGTGAGTTTTGCCAAAGGACGTTCACTAGGAAAGAACATCTAAATAATCATCTCCGTCAACATACCGGAGATTCTTCACACTGTTGCAACGTGTGCTCCAAACCATTCACAAGAAAGGAACATCTCGTGAATCATATGCGTTGCCATACTGGTGAACGTCCATTCGTGTGCACAGAATGTGGCAAGAGTTTCCCACTGAAGGGCAATCTTCTCTTTCATATGCGCTCGCACAACAAGGGCAGCAATGCCGAAAGACCATTTCGCTGCGACTTATGCCCTAAAGATTTCATGTGCAAAGGACATTTGGTCTCGCATCGGCGCTCGCATTCAGACGAGCGACCGCACAGTTGTCCGGATTGTGGGAAGACCTTTGTTGAGAAGGGCAATATGCTGCGACATTTGCGCAAACACGCGGCTGAAGGCCCGCCGACACAAGTTAGCACACCATCGGCTATACCGCAATCCGGTGTACTGCCGATACCGGCAGCGGCGGCAGTTCTAGTCGGGCATCCCTTAGCACCGCCGGCACCGCCTGTGGTGCCGCAACATACGGTGGTTGTGCCGACACCGCCCGGTGTATTAACATCGTATTAG
Protein Sequence: MNSEQHALPATTQAQQEDVNAGQSGRPSYPGGLATATASLGNVGSTPHSSADLRVGTAVALASSVASSVAKYWVLTNLFSPGPLPQVSVYHHSHHNSSHRSGGSGETSSSKEPASSLNQEMALTSSSHHQQQSTAAHHHQPSVSSSSSHHSSLQSNPQIPVSLPGLNLDGAHLPASVSHLAAHAQMQQMQAQAQQQLHQQQQQQPPQQQQQQQQQSHHQIPNHQNAQNNGPTAHGQNAQRDDNKVKDEGGSCTTERCSDNQVHCQVQCDLQLQPPQDLQQSLMQQQQQQQQQQQQQQQQQIGVNISGNSTTEGGNQNNSEKPEKEKELRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGSTVPTQTVTTIQNGTPIVQQVQLNKFDIKSSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFSNANDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCSYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSAIPQSGVLPIPAAAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00899003;
90% Identity: iTF_00014883;
80% Identity: -