Tsep005782.1
Basic Information
- Insect
- Trachymyrmex septentrionalis
- Gene Symbol
- -
- Assembly
- GCA_001594115.1
- Location
- NW:4094442-4103080[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 9.6e-07 0.00078 18.7 1.8 3 43 11 53 9 54 0.94 2 13 1.6e-05 0.013 14.8 7.1 2 44 70 109 69 109 0.94 3 13 0.0005 0.41 10.0 0.7 3 41 124 161 122 166 0.91 4 13 2.6e-07 0.00021 20.5 6.4 4 44 244 286 242 286 0.89 5 13 1.2e-07 0.0001 21.5 0.7 3 44 303 341 301 341 0.91 6 13 0.00062 0.5 9.7 1.4 5 39 359 392 357 400 0.92 7 13 2.9e-05 0.024 13.9 1.4 6 44 469 509 466 509 0.88 8 13 6e-06 0.0049 16.1 1.0 2 29 525 550 524 565 0.84 9 13 0.0005 0.41 10.0 0.7 3 41 579 616 577 621 0.91 10 13 1.7 1.4e+03 -1.3 0.2 18 35 670 687 662 688 0.73 11 13 0.002 1.6 8.1 5.4 4 29 697 720 695 741 0.81 12 13 0.00017 0.14 11.5 1.3 3 44 758 796 756 796 0.91 13 13 5.7e-05 0.046 13.0 0.6 5 39 814 848 812 856 0.95
Sequence Information
- Coding Sequence
- ATGGCACTTCAAGAAAGATCAGACAATTGGCTGTGGAAACATGTTCTTAAATTAAACGATTCTATACAGtgcaatatttgtaataaaatttataaaatgactGATGCTAAAAAAGATAGAGAGATGACATTAATAAAAGGACATTTATACCATGAGCATGGAGAATACGATAAAAAAGATCGGTTAGAATGGGAAAACAACAATGACTTAATATGGCAATATTTCgacaaaacaaatttatatacagcaaaatgtaaattttgtggCTGTTGTATTCATCACTCATATGTACCAAATATAAAGTTGCATCTGCGAAACCACCATCAAGAAATAAGAActgatatacaaaaaaaaattgcggaTAAGTCTCTATGgcaatatttcgaaatttatgaagaaaaatttagtGCATGGTGCAAACGTTGCGATGTTAAACTGGACATATTTTACGGGACAGATGtcttaataaatcatatttgttCTAAAAGGAATAAATCTTTAAGATCTCGACAAGAACCTGAAGATAAACCTGATGTGAACAGAATGACACAACAATCTGTAGTCgatgaaaatacaaattcaagTTCCTAtcatgataatttaaataaagtttttggAAATCGAGAAAATCAACAAAGtaACACATCGCGATATTGTACGAAAATAAGCTCGACATGGATCAAACGATCGAATGTGGCAGCTCGAGAAAGATCATATAATCATTGGATGTGGAAATATGTTtctaaattaaacaaattcacTGTAAAGtgcaataattgtaataaaacttattcTAATAAACATCGTATAAGTAAATTGATACCATCAATGATAACACATTTATACTATAAGCATAAAATATGGAATGAAAAGGATCGCTTAAAATGggaaaacaataataacttGATATGGCAATATTTTGACAAAGTAGACTTATTCaaaggaaaatgtaaattttgtaagcTTTTTTGTCAAGGAATATTTACAGGAAATCTAAAAATGCATCTACAAAGAAAGCATAGTCAAGAAATAAGAGCTATTGTACAAAAAGTAATTGCAAATAAGTCGCTATCACAATATTTTGAAGTTTGCAAGAAAAACTTTATTGCAAGGTGCAAACGTTGCCATGCTCTACTGGACATATTTTACGGGACAGATGCCTTAATACACCACATTTGTTTTGAAAAGGATAATTCTTTAAGATCTCCACAAAAACCTGGAGATAATGATGTTAACAGAATGGCACAACAATCTATAGTCAttgaaaatgcaaatataagcTTCCATCGTGATGATATAAATAGACAAGCTCCTCGAAATCAAGACCAACAAAGTATACACATATCGCGACTCTCTGTGAATACAATGGCACTTCAAGAAAGATCAGACAATTGGCTGCGGAAACATGTTCTTATATTAAACGATTCTATACAGTGCAATATTTGTGATAAAGTTTATAAGATTAATCCCGAAAGTAGAAAtagaacgataaaaataataaaaggacATTTATACCATGAGCATAAAAAATACGATGAAAAAGATCGTTTAGAATGGGAAAATAACAATGATTTAATATGGCAATATTTCgacaaaacaaatttatatacagcAGAATGTAAATTTTGTGGCCGTTGTATTCATCGTTCATATCTACCAAGTATAAGGTGGCATCTGCAAAATCACCTTCAAGAAATAAGAgctagtataaaaaaaaaaattgcggaTAAGTCTCTATGgcaatatttcgaaatttatgaagaaaaatttagtGCATGGTGCAAACGTTGCGATGTTAAACTGGACATATTTTACGGGACAGATGtcttaataaatcatatttgttCTAAAAGGAATAAATCTTTAAGATCTCGACAAGAACCTGAAGATAAACCTGATGTGAACAGAATGACACAACAATCTGTAGTCgatgaaaatacaaattcaagTTCCTAtcatgataatttaaataaagtttttggAAATCGAGAAAATCAACAAAGtaACACATCGCGATATTGTACGAAAATAAGCTCGACAGGGGTCAAACGATCGAATCTGGCAGAAAGATCATATAATCATTGGATGTGGAAATATGTTtctaaattaaacaaattcacTATAAAGTGcaataattgtgataaaatttattataataaatgcggTATTCATTTATACCAATTTATACTATCAATAAAGGTACATTTATACTATAAGCATAAAATATGGAATGAAAAGGATCGCTTAAAATGggaaaacaataataacttGATATGGCAATATTGTGACAAAGTAGACTTATTCaaaggaaaatgtaaattttgtgaGTATCTTTGTCTGGGAAGAAAAGTAGGAAGTCTAAAACTGCATCTAGAAAGAAAACATAGTCAAGAAATAAGAGCTAttgtacaaaaagaaattgcaaataagTCGCTATCGCAATATTTTGAAGTTTGTGAAGAAAACTTTACTTTTGCAAGGTGCAAACGTTGCCATGATGTACTGGACATATTTTACGGGACAGATGCCTTAATACACCACATTTGTTTTGAAAAGGATAATTCTTTAAGATCTCCACAAAAACCTGGAGATAATGATGTTAACAGAATGGCACAACAATCTATAGTCAttgaaaatgcaaatataagcTTCCATCGTGATGATATAAATAGGCAAGATCCTCGAAATCAAGAaaaatatgaaaaagaagcTGCAGATAATAGCGAGTATATAATGATGCAACATGACGTAGCAGCAGAAAATATGAATACGCGTTATTATTATGGAAGTACATATTGGCATAATCTTGAAAATCAAGAAGGTCAACAAAGTTCTgaagaaaattacataaataacataGTATCCCATGCTCATGACGTTTCGGATGTAAGTTCTCGTCATGACGATACAAACTGGCAAACTTTTGGATATCAAGTAAATCAACAGAGAATGATGCATCAACTTGTGGCAGCAGAAAATATGGCGACAAATTCTTATAATGACGATACAACTTTGCAAGCGCTTGGAAATcaagaaaatcaataa
- Protein Sequence
- MALQERSDNWLWKHVLKLNDSIQCNICNKIYKMTDAKKDREMTLIKGHLYHEHGEYDKKDRLEWENNNDLIWQYFDKTNLYTAKCKFCGCCIHHSYVPNIKLHLRNHHQEIRTDIQKKIADKSLWQYFEIYEEKFSAWCKRCDVKLDIFYGTDVLINHICSKRNKSLRSRQEPEDKPDVNRMTQQSVVDENTNSSSYHDNLNKVFGNRENQQSNTSRYCTKISSTWIKRSNVAARERSYNHWMWKYVSKLNKFTVKCNNCNKTYSNKHRISKLIPSMITHLYYKHKIWNEKDRLKWENNNNLIWQYFDKVDLFKGKCKFCKLFCQGIFTGNLKMHLQRKHSQEIRAIVQKVIANKSLSQYFEVCKKNFIARCKRCHALLDIFYGTDALIHHICFEKDNSLRSPQKPGDNDVNRMAQQSIVIENANISFHRDDINRQAPRNQDQQSIHISRLSVNTMALQERSDNWLRKHVLILNDSIQCNICDKVYKINPESRNRTIKIIKGHLYHEHKKYDEKDRLEWENNNDLIWQYFDKTNLYTAECKFCGRCIHRSYLPSIRWHLQNHLQEIRASIKKKIADKSLWQYFEIYEEKFSAWCKRCDVKLDIFYGTDVLINHICSKRNKSLRSRQEPEDKPDVNRMTQQSVVDENTNSSSYHDNLNKVFGNRENQQSNTSRYCTKISSTGVKRSNLAERSYNHWMWKYVSKLNKFTIKCNNCDKIYYNKCGIHLYQFILSIKVHLYYKHKIWNEKDRLKWENNNNLIWQYCDKVDLFKGKCKFCEYLCLGRKVGSLKLHLERKHSQEIRAIVQKEIANKSLSQYFEVCEENFTFARCKRCHDVLDIFYGTDALIHHICFEKDNSLRSPQKPGDNDVNRMAQQSIVIENANISFHRDDINRQDPRNQEKYEKEAADNSEYIMMQHDVAAENMNTRYYYGSTYWHNLENQEGQQSSEENYINNIVSHAHDVSDVSSRHDDTNWQTFGYQVNQQRMMHQLVAAENMATNSYNDDTTLQALGNQENQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -