Tcor009494.1
Basic Information
- Insect
- Trachymyrmex cornetzi
- Gene Symbol
- -
- Assembly
- GCA_001594075.1
- Location
- NW:2917518-2934846[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1 70 3.6 0.5 1 23 156 181 156 181 0.96 2 15 2.3 1.6e+02 2.5 0.6 12 23 183 194 182 194 0.88 3 15 0.44 30 4.8 8.5 2 21 477 496 476 499 0.94 4 15 1.2 86 3.3 1.1 2 23 667 688 666 688 0.96 5 15 0.018 1.2 9.2 0.5 1 23 704 726 704 726 0.97 6 15 0.0066 0.46 10.5 0.2 1 23 734 756 734 756 0.98 7 15 0.11 7.7 6.6 1.0 2 23 854 875 853 875 0.95 8 15 0.094 6.5 6.9 0.8 3 23 887 907 885 907 0.96 9 15 0.0025 0.17 11.8 0.4 1 23 984 1006 984 1006 0.98 10 15 0.024 1.7 8.7 0.3 1 23 1080 1102 1080 1102 0.97 11 15 2.7e-05 0.0019 18.0 0.9 1 23 1108 1130 1108 1130 0.97 12 15 0.0036 0.25 11.3 2.6 1 23 1193 1215 1193 1215 0.97 13 15 0.0012 0.084 12.8 2.2 1 23 1221 1243 1221 1243 0.99 14 15 0.57 39 4.4 0.9 2 23 1335 1356 1334 1356 0.96 15 15 9.9 6.8e+02 0.5 0.3 3 23 1365 1385 1364 1385 0.69
Sequence Information
- Coding Sequence
- ATGTTTCCTGCGGCAGGCAAGGGCGAGCGAAGAAGTTTGCGCGGAAGCGCCCGGCTCTCGTCCAAGATGTCGGGAAAGCTGCCCCGGTTGCGTGTACTGCGACCGCGGCAGCAGCACCAGAGGCGAGCAAGAACAACGGAGCCCGTCGCCACCGTCGTCTCCGCGACGCCGAGACCGGAAGGTAACCTTAAAGGGGCCGTAGCGAGCCATGAGGTGCAGCACGATGCGAAGAAAAACGATGCGAAGAAGGGTGAAGACACGTTCGCGTCCAGTACTGTGACTGCTGATGACCCTGCTGTGAACGAGACGAGCGAGATGGACGAGGATGACAACGTCAGCGAGCTGACGATGACCGCCGTCGACGAGGAGGCGACAACATCGCTGGACGGCAACATTGACGTTGACGTCGCCGTCGCGGTGAAATCCGAGGAGACGATCAACATCGACACGAACGAGCGAGCGTCTTACGAGTGCAAGACCTGCAAACCACCGAAAATGCTGTCCAGTATCAAGGCCTACTTCGAGCACCTGCGAAAGGATCACAAATATAAATGGAATCTAGATAGACACATGCGGAATCATGGAGGTGGAGGTGCTTTCAAATGTCGTGCATGTAATTTTACTGCTGATATCCGTCAGAGCTTAACGGTGCATGAATCGTATCATCATGACCCACCTGTGGGTCAaatcaacaaaaataataacgattTCGAACGTAAGCCACGAAATAGTCCAAGACGTTATAATCAGGTTGGAGCCAGTGACTTTCGAGAAGCGTTGAATAAAAGTGGAAGTACAACCACGTCAGCCGCTTCTTCTGACTCGTTCGTATCAGatcattcattaatttcaatagaCGATAAGAAAAGCGCCTTGGCCAACGCAGAGTGCATTGCATTAAAATGCGAAGAAAAGGGCTGCCAATTTATAACAGCTTGGGATTCCGAGATGCAACGCCATTTAGCAGAATGTCACGCGCCGGTTATCTCATCAAAGCCAAGAAAGCCACTGCCGATGTTAATTCCACTGAGCCTAGCGAGCACCAAGTCCAATAACACTTTCAACAATAGCGGGCCATCTACAACCCTGCTGAAAGTTCCACGCGTTAGAGTGAGACCTGAATTGGCGCAAATTGCGAAAGAGACGGAACTCGCCAAGATGTACGGAAACAAGGGGGCCGCGAATTCGAAGAGGAATCTTAATACTGCGACTGGTGTATTTGAGAGAAAGAATGCCTCCTTCTTCGATAAATTAAAGGAAAAACTAACAACGACAGCGACGTCGATTAATAACAGTGTGCCGGAGGTAGCTGTAAGTAATGAGAACGACTTAAAATGCTGGTGTACGTTTAAAGCTAGTAGCATGGAAGAGCTAACTTGCCACAAACAGACGCACCACACTGCCCTCAGCGTGTCCGTAGGCACGACACGTTGTCCTAAGTGTAGAAGACGGTGCAAGAGTACAGCCGATCTCCAAACGCATATGCAATGCTGCCATTCGCGTGACGACACGACGCCGTCCATCGATAGTAGTTTAGAGAAAGTAACGAATCGCTCGGACATCCGCATGATTTCGTACCGTGACGAATTGTCTTTTCCGTCGCAAATGGAATGGGACGCCAATCTCAGAGGATCAAATTTTTCTGGACCTCCGGTAGAACAGCAATCGTGGGATGAGGATCGTATGGAGCAGCGCAGCATAGAAGAAACAAACTCTGAAGAATTGCCATCAAAGTTATTGATTGTGGGCAATAAAGAGTATCCGATGACTAGTTCAGCACCACAATCTCCCATCACAATTTTAACAACAAACGAGACAAATCAGAACAGTCATAACGTAGATAGGCGACCTCCACCACCACTCAAAGCAGCGGTTAGAAATCGCGGGCAATCTTTGTTGAAAAACAATCCTATCACGATGCATGTACAGACCTCTAGTGGTGGTGGTGCGGTCTCTATATCTACAGTAGATGAGAGTAAACGTACTCAGAATCAGTGGAGGTGCAAACGTTGTAATTATCGAGATAGCAACAAAGATAATATATTGCTGCATGTTAAATCTCATTACAACGAATCTGCCAATCAGGAGTCTGTCGAAGAAAGGAATCCATTTAGTTGTGATGAATGTCCGTTTTCGGCATCGGATGCTGCCACTCTGTCCATTCACAAGAAGCACCATCGGCCGAACTTAGATGCTATATTTAAATGCTATCTTTGTCCATACTACGTTAGTACAAAGGCAGAACTATTGGAACACGCTAGACTTCACGGAGAAGAGTTGGCAGCTATGCATCAACAGAATATGGATTTCCCATTATCCAGTCCTAAGAGTAAACAGTCACAAATATCAATTTCTGAAAGCAGTACTTCTCGAACAAAAGACGAATCGTCTATCGAACAAGTGATTCAAATAACGTCACGTAACAATGTAACGACATCTCCAAAAATCACAGGATCTCAGCCGCATTCACTGCCGTCGCTTCTTTTGGATACTCGTGCTCTTCCGGATGCTCCACTGGTTTGGGTATCACGACCAGATGGCACACTGACGAAGATGCTCAAGTGCCGTCATTGTCCGTATATTTCATCGCGACGTGCGGAAGTGCGCGACCATGAGACAATGCACGTAGACATGCCAACTCAGGGTCCCTTGATTGCCTGCACCGATTGTAGCTTTACTTGCACGCGTCGGGAAGTCATGATCGCACATACAGAAATGCATGCGGGATCTCTCGGTACTGTTCACTGTCTTTTTGATGAGACGCGACCTGATTCTCAACAGGTGAATGATCTGGTCACTCTGCTTGGCTTGACGCACACTCCCATGCTAGGCACCGAGCCTGATCTACAGGATTCCCGTCTGGTGCACTGCTGCGGCAAGTGTCCAGCACGATTTCTGTGCGAAAAGGAGTTGCGTATCCATCTGCGTTACCATAGCACATTATTAGCATATTCATGCCAATGGTGCTCGTATGCAGCGCGACAATCGGCGCACCTGTTAGCTCATCAAAAGGCGCACTCATCAGATTATCAAGAACGTACCAAATATCTGTTGACCTTCTACGGCCACTCGCAACGTTATCCACCGCCCACGACAGCGTGTGTTGAAGTGGAGAGTCGGGAAAACAATGACAATGCGCTTAACGTTGCATGGATTGTTGTTGAAATCAACGAAAATTCAAACAGTTATAACAGTGTCAATGGCACGACGGAGACCGTTCAAAGGACCGGTCAAGTGTTTACGTGTGCTAAGTGTCCGGCTCGTTACTTCAAACTGGATGCTTTGGAGTACCACATGACGCTTCATGGTTCAAACAATCGATACAAATGTAATGACTGTGATTATTCATCGAAAACGGAACAAAATCTATTAAAACATCAGGTGGTACACCGACGACATAATGAAACCAGCCAAGCAACTGCGGAGCTATCATCTACCATAGATTCCGCTTCAACATCCTCTCCCGGATCTCCACTGCAGTCACCTCCGGATCCACAATTTGGTGTCTTTATGCGCGGCAATCCTAATTTCGTTTATCCAGGTTACCTACGGAATGGTCGTCTGAAGGAAAAACGTTACAAGTGTCACAAATGTCCATCCGCTTTTGAAAAGCGTGAACAATATAGAGTTCATCTGACTTTGCACGGTGCGAAGCAACGCTATCGCTGCACTACGTGCGACTACTCGGTCAAATATTATGCGAATTACGTACAGCATCTGAAGAAGCATCAGGCAAATGCAGAAGCACAGGCATCTCGGAGACAATTCGAGGATGACCGGATTTCAATCGATAACGATAGCATTACTGACATTGTATCAGCATCATCACGTAAGTCGTCGAGATCATCTGCTGCTGCTAATATGACGGCATTTTCTTCCGCTAATAACGCGTCCAATAACAATGCTGCGCTACAATCTTCTAATCAGGATAGGCAGAGTTTATTGTTAATGCAAAAGAAGGGTATCCTTTCGTCAACGGGCGACACCGATGTAGAGACGATTCGTTGCCAGAGCTGCCCGTTCTCCACCACCGATAAGGATGTCATGGATTCACACAAGCGTCGCCATGGTATTGAACGCATGACGCCGCCGTGCCCGCATTGCGATTACATTCCGCGAAAAGACGAAAACGTCGGTGAGCATATCAAGCTGCACTTCACAAGACTGTACAAGCCTGAGTCCTATCTTATTGTCGAAATGCTGACGTTGACAACGGAGAAAATATCTGCGAACAACAGAAGTGATAGGGGTCAACGATTGAAGGAACTACTGTTCAAGGAATGCGCCGATGGTAGATTCCTACCGCTCACCGAAACGATCAACACTTATACTTTAGGTACCTCCTCTTCAAAAGTAAAAACTGCCAAGGAGAAGATTATTATAGATTCAAACACAGGCGAGACTAAGCATCGTCTTGCCACGTAA
- Protein Sequence
- MFPAAGKGERRSLRGSARLSSKMSGKLPRLRVLRPRQQHQRRARTTEPVATVVSATPRPEGNLKGAVASHEVQHDAKKNDAKKGEDTFASSTVTADDPAVNETSEMDEDDNVSELTMTAVDEEATTSLDGNIDVDVAVAVKSEETINIDTNERASYECKTCKPPKMLSSIKAYFEHLRKDHKYKWNLDRHMRNHGGGGAFKCRACNFTADIRQSLTVHESYHHDPPVGQINKNNNDFERKPRNSPRRYNQVGASDFREALNKSGSTTTSAASSDSFVSDHSLISIDDKKSALANAECIALKCEEKGCQFITAWDSEMQRHLAECHAPVISSKPRKPLPMLIPLSLASTKSNNTFNNSGPSTTLLKVPRVRVRPELAQIAKETELAKMYGNKGAANSKRNLNTATGVFERKNASFFDKLKEKLTTTATSINNSVPEVAVSNENDLKCWCTFKASSMEELTCHKQTHHTALSVSVGTTRCPKCRRRCKSTADLQTHMQCCHSRDDTTPSIDSSLEKVTNRSDIRMISYRDELSFPSQMEWDANLRGSNFSGPPVEQQSWDEDRMEQRSIEETNSEELPSKLLIVGNKEYPMTSSAPQSPITILTTNETNQNSHNVDRRPPPPLKAAVRNRGQSLLKNNPITMHVQTSSGGGAVSISTVDESKRTQNQWRCKRCNYRDSNKDNILLHVKSHYNESANQESVEERNPFSCDECPFSASDAATLSIHKKHHRPNLDAIFKCYLCPYYVSTKAELLEHARLHGEELAAMHQQNMDFPLSSPKSKQSQISISESSTSRTKDESSIEQVIQITSRNNVTTSPKITGSQPHSLPSLLLDTRALPDAPLVWVSRPDGTLTKMLKCRHCPYISSRRAEVRDHETMHVDMPTQGPLIACTDCSFTCTRREVMIAHTEMHAGSLGTVHCLFDETRPDSQQVNDLVTLLGLTHTPMLGTEPDLQDSRLVHCCGKCPARFLCEKELRIHLRYHSTLLAYSCQWCSYAARQSAHLLAHQKAHSSDYQERTKYLLTFYGHSQRYPPPTTACVEVESRENNDNALNVAWIVVEINENSNSYNSVNGTTETVQRTGQVFTCAKCPARYFKLDALEYHMTLHGSNNRYKCNDCDYSSKTEQNLLKHQVVHRRHNETSQATAELSSTIDSASTSSPGSPLQSPPDPQFGVFMRGNPNFVYPGYLRNGRLKEKRYKCHKCPSAFEKREQYRVHLTLHGAKQRYRCTTCDYSVKYYANYVQHLKKHQANAEAQASRRQFEDDRISIDNDSITDIVSASSRKSSRSSAAANMTAFSSANNASNNNAALQSSNQDRQSLLLMQKKGILSSTGDTDVETIRCQSCPFSTTDKDVMDSHKRRHGIERMTPPCPHCDYIPRKDENVGEHIKLHFTRLYKPESYLIVEMLTLTTEKISANNRSDRGQRLKELLFKECADGRFLPLTETINTYTLGTSSSKVKTAKEKIIIDSNTGETKHRLAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00127818;
- 90% Identity
- -
- 80% Identity
- -