Basic Information

Insect: Trachymyrmex cornetzi
Gene Symbol: zfh1
Assembly: GCA_001594075.1
Location: NW:883318-918544[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.17 12 6.1 0.3 2 23 77 99 77 99 0.89

2 7 1.8e-05 0.0012 18.6 0.6 2 23 118 139 117 139 0.97

3 7 4.2e-06 0.00029 20.6 7.8 1 23 148 170 148 170 0.99

4 7 8.4e-06 0.00059 19.6 1.3 1 20 176 195 176 197 0.96

5 7 0.00046 0.032 14.1 5.5 1 23 642 664 642 664 0.94

6 7 5.3e-05 0.0037 17.1 7.1 1 23 670 692 670 692 0.98

7 7 0.0011 0.077 12.9 4.3 1 21 698 718 698 719 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.17	12	6.1	0.3	2	23	77	99	77	99	0.89
2	7	1.8e-05	0.0012	18.6	0.6	2	23	118	139	117	139	0.97
3	7	4.2e-06	0.00029	20.6	7.8	1	23	148	170	148	170	0.99
4	7	8.4e-06	0.00059	19.6	1.3	1	20	176	195	176	197	0.96
5	7	0.00046	0.032	14.1	5.5	1	23	642	664	642	664	0.94
6	7	5.3e-05	0.0037	17.1	7.1	1	23	670	692	670	692	0.98
7	7	0.0011	0.077	12.9	4.3	1	21	698	718	698	719	0.96

Sequence Information

Coding Sequence: ATGAGCATGACTCTCGTCCGAAATTCGTTCAAAGGCTGTAGCGAGGACGACGCAGGTGTCGTGGATACGGAGGTGGGCGGAGGTTGCGCGGGTGGAGCGCCAACCGCAGGAGGTGGAAGTGTTGCCGGCGATGGAAGTGGTGGCGGCAGCGGTGGTACGTGCGGGGGGGTGGGTGGTGGCGGCGACAGCGAGGGCGGATCATCCGCGAAGCAGCAGCAGGGTGGCGAAAGGTGTCCTCAGTGCGGCATCCCCTGTCGGGACGGCCGTGTCCTGCAGCTTCATCTCGAGGACACGCACAAAACGTCCTGTACCATCGACAAGCACGATCTCAACGCCCAGTTCTCCCAAGTGTCCTGTAAGGTGTGTAGCAAAACCTTCGCCAACGTCTACCGATTGCAGAGGCACATGATTAGCCATGATGAAAGTGCTGTTCTACGAAAGTTTAAATGTCCTCATTGCGAGAAGGCCTTCAAGTTCAAGCATCATCTTAAGGAACATCTGCGCATTCACAGTGGTGAGAAGCCATTCCAGTGCAACAATTGCGGCAAGCGTTTCTCTCATTCTGGATCATATTCGAGCCACATGACAGCGAAAAAGTGCTTGATAATGAATCTGAAAAAATCGAGGCAGAACACCATAACCAATGTCGATCGGGGACAGAAAAAGACGCATCAGGTTTTATCGGGACGACGTGACGTCGATCTGCTGACAGCCAACAATAATACGTTTCTGCCGATTCTGCCAAAGTTATCGCCGTCGGAGTATCAAGAGATACAAAGAGAGGGAACagGTATTTATGACGTGCCAACTCTGTTGCCTCACATGATGGGATTCGGAAATTATTTCCTGCAGTCTTCGATAGGCAAGTTGCTGAACCAATTGCACGCTAAGCGATTTGACCACATTACTGAGCAATTTGAGACGCATCGGGAAGTGATGAGTCCATCGACAGCAGACTCTGAGGGAACGGAGGGCACTGAGGGCAAGGAGTCTCCCGCACCGGTAGATCCGTTGCAAGGTCTGGATGCGGTTCGACGAATATTAGAAACTGTAAACACCTCCGTGACGAAGCAGCTGCTTGAAGCGAACATGCGGAAGCTATCCACGTCTCCAGCCACGATGAAACGGGAGTTCGAAGAGGATTATCAGGATCAAGATAGCGAAATGTCTAATGAAATGACACATTGTCCGGATTGGGGCACAACAGACCAATATGATTCTCAAAGTGAAGGTTTAGCCGCGAAGCTCGAGAATATCAATCATCCGACATCGAGATCAGCCAAGAGAAAAGCGGAGGAAAGTTCTGAGGCAGATTCAGAAGATGAAGAAGAGGGTAACCAGACTCAAAACGACCACGGTAGAAGAGTCAGAGCTAGGTCGCTCATAGATGATGAACAGCTTGCTGTTTTGAAAGGTTATTATGCCATCAATCCGCGACCTAAAAAGGAGGAGATCATCATGATCGCCAATTACATCAATTTTCCTACTCGTGTCGTACAGGTTTGGTTTCAAAATTCACGTGCCAGGGATCGAAGAGAATCGAAAATGCCACCAGCTTTGGTACCTTTAGCGCTTCCAGAGAATCCATCTATTATTGAGCAGCCTTTAGATTTATCGAAGAAAGAAGCGCTTGTTATATCGGCGACCAAAGATAGTGATACATCAAGCAGAAACACCTCGTCTCCATGCGAACAGAAGGATGATATTGCAGCTCCAACTGTCCCCCTCGACAACGATGACCTCGAGGATTTACCTTTAGTCATAGACGAAGAAACCGCTACTGATCCCATTGAAACTAAGCGTATACCTCCTAGTGGAGAGATAATCACAAAGAATCAAAATCAAGTAAACGCAAAGGGCGAGAGCGAAATTGCACCACAATCGGAAATAACCCCTACAGCAACAGAAAACGAGCAGGGTCTTTATTTCTGTGATCGGTGTGAGAAAACATTTTCCAAACACAGTTCCCTTACGAGACACAAGTATGAACATTCCGGGCAAAGGCCCTACAAATGTGTGGAGTGTCCAAGAGCGTTCAAGCACAAGCATCATCTGACTGAACACAAGCGGCTGCACAGTGGCGAAAAGCCCTTCCAGTGCTCCAAGTGCCTCAAGCGCTTCTCTCACTCCGGCTCCTATAGCCAACACATGAATCATCGTTATTCTTATTGCAAACCCTACAGAGAATAG
Protein Sequence: MSMTLVRNSFKGCSEDDAGVVDTEVGGGCAGGAPTAGGGSVAGDGSGGGSGGTCGGVGGGGDSEGGSSAKQQQGGERCPQCGIPCRDGRVLQLHLEDTHKTSCTIDKHDLNAQFSQVSCKVCSKTFANVYRLQRHMISHDESAVLRKFKCPHCEKAFKFKHHLKEHLRIHSGEKPFQCNNCGKRFSHSGSYSSHMTAKKCLIMNLKKSRQNTITNVDRGQKKTHQVLSGRRDVDLLTANNNTFLPILPKLSPSEYQEIQREGTGIYDVPTLLPHMMGFGNYFLQSSIGKLLNQLHAKRFDHITEQFETHREVMSPSTADSEGTEGTEGKESPAPVDPLQGLDAVRRILETVNTSVTKQLLEANMRKLSTSPATMKREFEEDYQDQDSEMSNEMTHCPDWGTTDQYDSQSEGLAAKLENINHPTSRSAKRKAEESSEADSEDEEEGNQTQNDHGRRVRARSLIDDEQLAVLKGYYAINPRPKKEEIIMIANYINFPTRVVQVWFQNSRARDRRESKMPPALVPLALPENPSIIEQPLDLSKKEALVISATKDSDTSSRNTSSPCEQKDDIAAPTVPLDNDDLEDLPLVIDEETATDPIETKRIPPSGEIITKNQNQVNAKGESEIAPQSEITPTATENEQGLYFCDRCEKTFSKHSSLTRHKYEHSGQRPYKCVECPRAFKHKHHLTEHKRLHSGEKPFQCSKCLKRFSHSGSYSQHMNHRYSYCKPYRE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01421778;
90% Identity: iTF_00128072;
80% Identity: iTF_01476080;