Basic Information

Insect: Trachymyrmex cornetzi
Gene Symbol: -
Assembly: GCA_001594075.1
Location: NW:683916-688856[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00066 0.046 13.6 0.6 1 23 346 369 346 369 0.96

2 10 5e-06 0.00035 20.3 0.5 1 23 375 397 375 397 0.99

3 10 9.5e-08 6.6e-06 25.7 0.3 1 23 403 425 403 425 0.99

4 10 0.22 15 5.7 5.4 1 23 431 453 431 453 0.98

5 10 6.7e-06 0.00046 19.9 0.3 1 20 459 478 459 479 0.96

6 10 0.018 1.2 9.1 2.3 1 23 488 508 488 508 0.94

7 10 1.1e-06 7.3e-05 22.4 0.5 3 23 516 536 515 536 0.98

8 10 0.00011 0.0073 16.1 1.4 1 23 542 564 542 564 0.98

9 10 0.00027 0.018 14.9 2.6 1 21 570 590 570 593 0.96

10 10 0.0071 0.49 10.4 4.2 3 23 601 622 599 622 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00066	0.046	13.6	0.6	1	23	346	369	346	369	0.96
2	10	5e-06	0.00035	20.3	0.5	1	23	375	397	375	397	0.99
3	10	9.5e-08	6.6e-06	25.7	0.3	1	23	403	425	403	425	0.99
4	10	0.22	15	5.7	5.4	1	23	431	453	431	453	0.98
5	10	6.7e-06	0.00046	19.9	0.3	1	20	459	478	459	479	0.96
6	10	0.018	1.2	9.1	2.3	1	23	488	508	488	508	0.94
7	10	1.1e-06	7.3e-05	22.4	0.5	3	23	516	536	515	536	0.98
8	10	0.00011	0.0073	16.1	1.4	1	23	542	564	542	564	0.98
9	10	0.00027	0.018	14.9	2.6	1	21	570	590	570	593	0.96
10	10	0.0071	0.49	10.4	4.2	3	23	601	622	599	622	0.97

Sequence Information

Coding Sequence: ATGATTAGCATGCAGCAGCAAACGATTTTGAATAATGTAACCGGGCCCGAGCAGCCACAGGAAGAAGTGCAGCTGACCGAATTGCTGCCAGTGAAGCAATCGCATATCAGAGAAAATGTCTTCAAGGATACCGACGCGACCGATGCTCTGAGGGCACTCAGGAGTCTCTCGGGCGACTGCAGCGATGGCGATAGCTTTAACCTGCGGGAATTTAACTTCTGCAAGAACGTCGAACAATTGGAACGTCGGGGCAGCAAGCATCGACGAGTGGAGGTTTGTCGcaaaaaaacgaaagaaatcAAGAACAATGCTAAAAACGTAGATTTTTATCAAGAGAAAAATAGCGGGGTGGTGGAGAAGAAAGTAACAATACGTAACAATAGCAAGATCGCTCACGTGAAAGCGTCGAAAAGGAAACTGACGAGCTCGTCAAGCAAGAAGAAGGATGACGACGGGGAAAGTAATTATGGCATGAATGAGAAATCGATTAGGAAGAATACTACTGAATGCGACGAAGAATTCCAACACCACTACGACGAAGAAGACGAGGACGAACAATTGTACTTGGACCTGGAAAAGAAAGACTGCTTTAAGGACGAGATTTACGTATATAGACGGGAACCGTTGGATCCGTGCTCGAGTTCGGAGCCAGAGGAACTAGGTGCGATCAGTCATAAGGATTTTTGTGAGGATTATCCTACCACGGATGGAAAATTATTTGATGGAAAAGGAACGTTTGTTGAAAAGATATCCAACGTAGATAACGTAGAGAAAGACAAATTCAAAGCAGATGACATTACTGAGAAAGAAATTCCCGAAAAGGAGCTGAGATTAAAGATCGACGCCATCATTCAAGCGAATTACTTGCTCGAGCGCGAAAATAATAACGTTGTGGGTTCCGACGAATCAAAGATCAAAATCGTAGAGCACATTGGCACCTCCTCTGCTTCCGCGGAAACgaaaaagacgaagaggaaACGAATTGATCATGAGAAGACCAGACAATTGAAGGATCAACAGAATTCTCAGAAGAAATACTGCTGTGTCGTATGCGACGCGCGTTTCAAGGGTAGCGGTGGTTTGCGAAATCACTACAAAGTAGTGCACGGTGCCGGACCGGTGTTCAAGTGCGATGAGTGCGGTAAGGAGTTTCCATTGAAGGAACGGTTGAAACTGCATGTGCGCACACATACCGGCTTCAAACCGTACAAGTGCCCGGAGTGCGATAAAAGTTTCGCGCGGGGTGGCCAGCTGGTACAGCACCGTCGCACGCATAGCCAGGTCAGGCCGTTCCACTGTAAGCTGTGCTCCAACACCTTCACGTGCGCGGCCAATCTGTCGCTACACTTGAAACGTCACAACGGCCAGAAGGATCACAAGTGTGACCTGTGTGGACGCGCTTTCGTGCGACGCGACGCCCTGAAGAAACATCTGGAATGCCTGCACCGTGACGTCAAGTCATTCCTCTGCGCGATCTGCAACAAGACCTTTAAGGGCCACCTACCGCAGCACATGAGGACACATGCGCGCGACCGTCCGCACGGCTGTGCTACGTGCGGCCAACGATTTGCTCAAAAGTCCCAGTTGACCGTGCACCAAAGGACCCATTCTGGCCAGCGGCCGTTTCGCTGTCTAGTCTGCTGGCAAGCTTTCGCTCATTCGACCGCTCTGAAGCTGCACACTCGACGTCATACCGGGGAACGGCCGTTTAAGTGTCCCGAATGCAATGCCGGCTTCACTCAACTGCCACACTGGAAGAAGCATATGAAGTGCATACATGGCAGGAGCGATCCATACGGCTGCAAGCGTTGCAAGAGATTTTTCAGGATTAAAAGCGACCTGGAAAGTCATGAGAAGACTTGTCATCCAGAAATGGAGGTGGAGGACGACGATGGTGGCGTCCCGGCCGGTAAACCGGCTGGCTGCTCCGAGATCGTTGAGAAGAATTCTGTCACTGCGAAATATAAACTAATGACGGTGGAGAAGATGCGGTTGCTGTTGGCAGTACTGTTGAAGAGGATCAGCAAGCAGGAACGGTTGGACGAGCTCGGCTTCGGTAAACGTCTTATCGACGACGTTCTTCAGGATTCCCTGGTGTCCGCTGGCAAAGAACCGGTCACGAGGAGCGGCTTGTCCGAGCTTGAGGCTCTCACTCGAAACTTAGAAATTTTTCTAGAATGGACAGTACCGAAGGAGCATTGGGAGAATTTccgtaaaatgaaaaaatcaccCGAAGATATTCTGGAGACGCTCACAGCTACGTAA
Protein Sequence: MISMQQQTILNNVTGPEQPQEEVQLTELLPVKQSHIRENVFKDTDATDALRALRSLSGDCSDGDSFNLREFNFCKNVEQLERRGSKHRRVEVCRKKTKEIKNNAKNVDFYQEKNSGVVEKKVTIRNNSKIAHVKASKRKLTSSSSKKKDDDGESNYGMNEKSIRKNTTECDEEFQHHYDEEDEDEQLYLDLEKKDCFKDEIYVYRREPLDPCSSSEPEELGAISHKDFCEDYPTTDGKLFDGKGTFVEKISNVDNVEKDKFKADDITEKEIPEKELRLKIDAIIQANYLLERENNNVVGSDESKIKIVEHIGTSSASAETKKTKRKRIDHEKTRQLKDQQNSQKKYCCVVCDARFKGSGGLRNHYKVVHGAGPVFKCDECGKEFPLKERLKLHVRTHTGFKPYKCPECDKSFARGGQLVQHRRTHSQVRPFHCKLCSNTFTCAANLSLHLKRHNGQKDHKCDLCGRAFVRRDALKKHLECLHRDVKSFLCAICNKTFKGHLPQHMRTHARDRPHGCATCGQRFAQKSQLTVHQRTHSGQRPFRCLVCWQAFAHSTALKLHTRRHTGERPFKCPECNAGFTQLPHWKKHMKCIHGRSDPYGCKRCKRFFRIKSDLESHEKTCHPEMEVEDDDGGVPAGKPAGCSEIVEKNSVTAKYKLMTVEKMRLLLAVLLKRISKQERLDELGFGKRLIDDVLQDSLVSAGKEPVTRSGLSELEALTRNLEIFLEWTVPKEHWENFRKMKKSPEDILETLTAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00126190;
90% Identity: iTF_01477829;
80% Identity: -