Basic Information

Insect: Trachymyrmex cornetzi
Gene Symbol: -
Assembly: GCA_001594075.1
Location: NW:3487022-3492047[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.98 68 3.7 0.3 1 21 354 374 354 377 0.86

2 10 0.0024 0.17 11.9 4.0 1 23 384 406 384 406 0.97

3 10 0.0009 0.063 13.2 5.2 1 20 412 431 412 434 0.95

4 10 0.0012 0.082 12.9 5.4 1 23 440 462 440 462 0.97

5 10 4.5e-05 0.0031 17.3 2.8 1 23 468 490 468 490 0.97

6 10 2.1e-07 1.5e-05 24.7 0.9 1 23 501 523 501 523 0.98

7 10 1.3e-06 8.7e-05 22.2 2.9 1 23 529 551 529 551 0.98

8 10 4.6e-07 3.2e-05 23.6 0.5 1 23 557 579 557 579 0.97

9 10 1.3e-06 9.1e-05 22.2 0.6 1 23 585 607 585 607 0.95

10 10 8.9e-07 6.2e-05 22.7 0.3 1 23 613 635 613 635 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.98	68	3.7	0.3	1	21	354	374	354	377	0.86
2	10	0.0024	0.17	11.9	4.0	1	23	384	406	384	406	0.97
3	10	0.0009	0.063	13.2	5.2	1	20	412	431	412	434	0.95
4	10	0.0012	0.082	12.9	5.4	1	23	440	462	440	462	0.97
5	10	4.5e-05	0.0031	17.3	2.8	1	23	468	490	468	490	0.97
6	10	2.1e-07	1.5e-05	24.7	0.9	1	23	501	523	501	523	0.98
7	10	1.3e-06	8.7e-05	22.2	2.9	1	23	529	551	529	551	0.98
8	10	4.6e-07	3.2e-05	23.6	0.5	1	23	557	579	557	579	0.97
9	10	1.3e-06	9.1e-05	22.2	0.6	1	23	585	607	585	607	0.95
10	10	8.9e-07	6.2e-05	22.7	0.3	1	23	613	635	613	635	0.98

Sequence Information

Coding Sequence: ATGTCGGAAAGTGCAAATTCGGAGATTAATTCCTACATGCGTAAATGTCGCGCGTGCATGGGGGAAGGCTGCAAAATGCTGTCTATGTACGATGATAACGTTAGTGGGATCAACTTGCCGTACAAGCTCGCGCAGATCACGTCTATCAAGATTGATCAATTTGATGGACTGCCTAACATACTCTGTCCAAAGTGTGCATATCGAACGAATGCTTTATATGAATTCAGACTACAAGTGCAAGAATCAGACAAGAAATTTAGAATGATGCTAGAAACTAAAATGAACATTATAAAGacagaACAGTTAAATGCtaagaaagaagaaaatgatGTACAAAAAGATGGATTTTTGGAATTAAATATATCAGGCGATGTAAAGTCTGATCGTACTTTTgagtttgtaaatattaaaataacagatGATATGGATCAACAACAATATGAAATTGATGTATCTCAGTTGGTTAAAGATAATGGAGATAATAAAGAGAACTTACAGTTGAAtgatgtttattataatatcgaaACTAACGAGGATCAAATGGGTGCCCAGTTGATGAAAACTGAGTTACCTgaagatatttcaaaaatatttgcaGAAAATGTCGCAATTATGTATATACCAAAATCTACGATTGATTCGATGTCAGTCGAGAACACGTTAACGCTTGATCCGGAGCAAGAAGCAATAGTAAATGACAATGGTACATTTATCTCTGAAGTGGAAATCTTGACTGAAGAAAATGAAGAAGCCTCAAGCAAAATATGCGTTTCCAGTCCTGTGGAACCTAATGCaactaaaaagaataaatgtacCTATTTGGAACAAGATGTAACATCAGTAATACAAGTTGAGAAACAAACAGAATATAATGAGATGATACAAAACAGAGATAATGACACAGAGCTCAATGAGAGTAGTTCCAATATTGAATTCATAGTAGAAAACAACGATGGATCTGATTCTGACTACTTTGTTGATGATAAAGACAATATATTAGGCAGTTTGAGCGATGCAATTATACGAATAAAGGAATTCAAACGAGAAAATGGAATCGAATATCAATGTACGTTATGTTTACAGAATTATAATCAACTGACTAGTGTATTATTGCATACTGTCGAGAATCATGTCCCTTCCAACGGTCCGTTCTTTTGTATGGTGTGTGAAAAGGACTGCAAAAGTCGTCGAGAGTTGCGAACACACGTGAAAACTCATACTGGCGAGTTTCCATATTCCTGCTTCCTTTGTAAAAAGGCATATAATAGAAAGAGATATCTGAAGAGACATATGGCATGCCATCCCAACTTTTCACGACACCGCTGCCTGAAGTGTGGTTGCCGCTTTAAATCAAAATCAGAATTAGATAGTCATGCGACAACACATGATCTAGTCGCACCCTACGCTTGCAGTCAATGTTCGCGTATATTTAATCACAAAGGCAATTACAAACGGCATCTGATCAGCCATTTGGATCCGCAGGGTCTTCATTTGCCTAAATATCCGTGCAATTACTGTGAAAAACGTTTTCCTAACAATCGTACACTTCAAACGCATATACGTGTACATACTGGTGAAAAACCGTTCAAGTGTGACGTTTGTCATAAGTCATTCTCACAACGAGGCAACTTATTGAACCACTCAAAGATACATTGGAATCCTCGCAGCTACACATGCGAAATCTGTGGCAAAAGCTTCAATCAACGTGCTACATTACGAGATCATACATTATTGCACACTGGTGAGAAGCCTCACATATGTAATGTATGTGGAAAAGCATTTACTGTTAGTGCAGCGTTGAGGAGGCATATGTTCAATCACGTTGAAGTCAGGCCATTCAATTGTGATAATTGTGGCATGGGATTCATCGGTAAATACGATTTACGACGACATATGCGAGTCCATGAGAACCGACCTAAGGAAAAgcgtaaaaaaaacataaaaacaacCAATGTTCTTCAGCAAAAATCAGAAGAAAGTCATGTTACGTTGGAAGAATTGAAAACTGAGACTGCGCTCATAGAAATAGAAGAAGGGCTTTTATCACAAAACATTATACAGACCATACCACAAATCGAATCAGAAAAGGAAAATGAGGATGCACTATTTAATAATCTTCAATCTTATTCAGTTATATACAGTACAACTGAAGATAGATCATAG
Protein Sequence: MSESANSEINSYMRKCRACMGEGCKMLSMYDDNVSGINLPYKLAQITSIKIDQFDGLPNILCPKCAYRTNALYEFRLQVQESDKKFRMMLETKMNIIKTEQLNAKKEENDVQKDGFLELNISGDVKSDRTFEFVNIKITDDMDQQQYEIDVSQLVKDNGDNKENLQLNDVYYNIETNEDQMGAQLMKTELPEDISKIFAENVAIMYIPKSTIDSMSVENTLTLDPEQEAIVNDNGTFISEVEILTEENEEASSKICVSSPVEPNATKKNKCTYLEQDVTSVIQVEKQTEYNEMIQNRDNDTELNESSSNIEFIVENNDGSDSDYFVDDKDNILGSLSDAIIRIKEFKRENGIEYQCTLCLQNYNQLTSVLLHTVENHVPSNGPFFCMVCEKDCKSRRELRTHVKTHTGEFPYSCFLCKKAYNRKRYLKRHMACHPNFSRHRCLKCGCRFKSKSELDSHATTHDLVAPYACSQCSRIFNHKGNYKRHLISHLDPQGLHLPKYPCNYCEKRFPNNRTLQTHIRVHTGEKPFKCDVCHKSFSQRGNLLNHSKIHWNPRSYTCEICGKSFNQRATLRDHTLLHTGEKPHICNVCGKAFTVSAALRRHMFNHVEVRPFNCDNCGMGFIGKYDLRRHMRVHENRPKEKRKKNIKTTNVLQQKSEESHVTLEELKTETALIEIEEGLLSQNIIQTIPQIESEKENEDALFNNLQSYSVIYSTTEDRS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01477809;
90% Identity: iTF_00015559;
80% Identity: -