Tcor005668.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trachymyrmex cornetzi
Gene Symbol
-
Assembly
GCA_001594075.1
Location
NW:156299-197792[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 1.5 1e+02 3.1 0.4 6 20 358 372 357 374 0.93
2 9 8.6e-07 6e-05 22.7 2.5 1 23 614 636 614 636 0.98
3 9 2.1e-05 0.0015 18.4 2.0 1 23 642 664 642 664 0.98
4 9 1.3e-06 9.1e-05 22.1 0.3 2 23 673 694 673 694 0.98
5 9 1.3e-05 0.00093 19.0 0.2 3 23 702 722 700 722 0.97
6 9 1.4e-07 9.9e-06 25.2 3.0 1 23 728 750 728 750 0.98
7 9 2.4e-06 0.00016 21.3 0.7 1 23 756 778 756 778 0.98
8 9 5e-05 0.0035 17.2 7.5 1 23 784 806 784 806 0.98
9 9 0.00028 0.019 14.8 1.4 1 21 812 832 812 833 0.94

Sequence Information

Coding Sequence
ATGATGGGAGAAGTGATCCGCGTTTCTGGGAGGGCACCGGATGTCGGTGACATTCTGAAGGAGGCCATGTTGTCGCAGAGGTTCGCTGATGTGGCCCTGTGCTGTCCAGGAGGTCAGCGATTCCTCGCGCATCGTTTAGTTCTGTCAGCAGCCAGCTCTTATCTTCAGgaGGTGTTACTTGCACACAGCAAAGTCACAGCTCATTGTGAGCCGATTACAGTGATTCTGGCAGAGATGGAGGCGCCGGAACTCGCGGCTCTTCTTGGCTTCGTCTACACTGGAAGCGCCTCTGTTCCACGGATGCGATTGGACGCGTTTCTGCGTGCTGCCGAGGCCCTGCGCATCCGGCTTCCACCGGTGCCAGTGATGACGACCTGCGGGGAACAAACAACGGACTGCAAGCTGGAAGATATCAAGGATGTCAAAGTTAGCCCCAAATACCTGCAGTGCGATCAGTATCCTTGGTACCGATCGAAAAGATTGTCTTACGAAGATCCGTTTGACAGGAAGGAGTCATATATTAGGATATTCCCCACAGACGACGTCAACAGAAATGCGTTTAGGGATATTGGAGCGTTTCATGAAGTTAACAATCCTGGCCCATCGTTCGGTCCTAGTTGTCCGAACTCGTGGCCAATAGGTAGTTTCCTGCATCAAGATAGAGCAACAGGTGATCCCTCCGCAGACAAAAATCACAGCTTGATACTTAATGACAAGAATCCGATAATAGCTCCTAGTAACGAATCGTCCTTCAGTATATATCAACGAGGTACGTGTCTTTCCGGAGGATCGTCTTCGGAAGGATACGCTGATCCAGATACTTTGGAAAAGATCAGAACGAGATACGAGAGATTGCATACGAGTTGCCCGTCGGAGAAGCTGATAATGAATGAGGACGTCCTTGTGGAAGGATCGGGAGGAGAGTCTTGTGGAACGACGCGGGACGAGTGTCCATACCAGGGCACGATGCCGTTGTCGTCCTTGCAGTGCGCGGCCGCCGCTACCAGCCAAACGAGGTCGTTCGAGATGCTCGATTACACCTCGCAGACTTCGGCGGGCGAGGATCTCAGTTGCGGCGAAAGTTGTTGTAGGTGGAGAACCGCTCGCAGACACGTGGCAAATCGCGTCACCGCGTCACCGTGGCGCCAGATTGTTAGGCCCCATCATTCACCGAAAAACCCACGTCTCATCCTTGTGCCTCAACGTCACGCCGATGACGAAATCCTTAAGAAGCTTCAGGCTTCGGAACCAACTCGATCTACAGTAATATCGAGCTCAAAGCATATTGTTCATTCTCCAAGAAGCGCACCTCGAAGCGACGGGCCCTGCCCTACGGTTTTCGAAGTTCCAATCAGTTGCGAGACAAGCTTCAATAATGACTTGAGATTATCGCGCGAGATAATCGATGGTCCGGAAGCGAAAATTCAAGAGATCTATCGATCACCAATCTCATTTGCACCTTCTGATCAAATCGCAATGTCCGTGAACGTGACGAGAAGCAGTGAACAACCTCTCTTCCAGAACGTTAGCAATACGCCTACGCAATCATTGTCTTCAAGCAACGACAGCGTTATCACGAATGCCGAAAAAGGTGGCGGATATCCGACGCAGGTAGTTCCGCAGACGCCGACGAAACCCGAATTGTCGCATCCGATCAGTAGACTCTGCGACACAATCGAGGCcgataagaagaagaagacgtcAAAGACGGAAGTGACGAACGTGGGAAAGGGCGGAGAAGAGAGAATCGCGAGGATTTTTGTTAACAGCGACAATAACAATAACAACGAGGCAATCGTAAACACGGAGATGGCGCAGCGTGGACGATCGGTGGATGACCACAGGTGTGATCAGTGCGGAAAGACTTTCGTCACGAGGGCGTCGCTCAAGGTGCACAGCCGAACGCACTCCGGTGAAAAGCCGTTCCGCTGCGCCGACTGCGGCAAACAGTTTTCGCAGCTGCGCAATTACAAGTACCATCGCAGTGTGCACGAGGGCACGCGGGAGTTTGCCGCCACTTGTCCGGAATGCGGCAAGTACTTCAACGACCGCGGCTACCTGAGCTCACACATGAAGATTCATCGGAACCGCAAGGAGTATGGCTGCACGGAATGCGGGAAGAGCTTCAATCAACGAGTGGCCTACAACATGCACGTGCGCATACACACGGGCGTGAAGCCGCACCAGTGCGATCAGTGCGGAAAGGCGTTCTCGCGGAAGATGCTGCTCAAGCAGCACCTGAGGACCCATTCTGGCGAGCGACCGTATCAATGCCAGGTCTGCCAGAAAGCGTTCGCCGACCGCTCCAACATGACCCTACACACTAGACTGCACTCCGGCTTGAAACCTTATCAATGCACCCTGTGCTCGAAGGCTTTCACTAAGAAGCATCACCTGAAAACTCACCTTAATTATCATACCGGTACCAAGCCGTATTCCTGCACCAATTGCGGTGGCAGGTTCTCGCAAAGTAGCAACATGAGGACCCATTTTAAAAAGTGCATTGTTAACAATACTGTCGGAATGGCAACGAAATCTGGTGATGAAGCCGGCACTGATCGCACCGATGCCGACAGCAACATAGCGCCGCAGGTGGTCCTAACTCCGCCCAACTCCGATCAGGAATCCAGTATCCTGACACCGATCTCGAAGAATGCTGTCGCTATAGAGAACAACACGTAG
Protein Sequence
MMGEVIRVSGRAPDVGDILKEAMLSQRFADVALCCPGGQRFLAHRLVLSAASSYLQEVLLAHSKVTAHCEPITVILAEMEAPELAALLGFVYTGSASVPRMRLDAFLRAAEALRIRLPPVPVMTTCGEQTTDCKLEDIKDVKVSPKYLQCDQYPWYRSKRLSYEDPFDRKESYIRIFPTDDVNRNAFRDIGAFHEVNNPGPSFGPSCPNSWPIGSFLHQDRATGDPSADKNHSLILNDKNPIIAPSNESSFSIYQRGTCLSGGSSSEGYADPDTLEKIRTRYERLHTSCPSEKLIMNEDVLVEGSGGESCGTTRDECPYQGTMPLSSLQCAAAATSQTRSFEMLDYTSQTSAGEDLSCGESCCRWRTARRHVANRVTASPWRQIVRPHHSPKNPRLILVPQRHADDEILKKLQASEPTRSTVISSSKHIVHSPRSAPRSDGPCPTVFEVPISCETSFNNDLRLSREIIDGPEAKIQEIYRSPISFAPSDQIAMSVNVTRSSEQPLFQNVSNTPTQSLSSSNDSVITNAEKGGGYPTQVVPQTPTKPELSHPISRLCDTIEADKKKKTSKTEVTNVGKGGEERIARIFVNSDNNNNNEAIVNTEMAQRGRSVDDHRCDQCGKTFVTRASLKVHSRTHSGEKPFRCADCGKQFSQLRNYKYHRSVHEGTREFAATCPECGKYFNDRGYLSSHMKIHRNRKEYGCTECGKSFNQRVAYNMHVRIHTGVKPHQCDQCGKAFSRKMLLKQHLRTHSGERPYQCQVCQKAFADRSNMTLHTRLHSGLKPYQCTLCSKAFTKKHHLKTHLNYHTGTKPYSCTNCGGRFSQSSNMRTHFKKCIVNNTVGMATKSGDEAGTDRTDADSNIAPQVVLTPPNSDQESSILTPISKNAVAIENNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01523510;
90% Identity
iTF_00014912;
80% Identity
iTF_01476382;