Basic Information

Insect: Trachymyrmex cornetzi
Gene Symbol: -
Assembly: GCA_001594075.1
Location: NW:254487-258564[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0014 0.096 12.6 0.5 2 23 128 149 127 149 0.96

2 11 0.0026 0.18 11.8 5.0 2 23 218 239 217 239 0.95

3 11 6.4e-06 0.00044 20.0 3.1 1 23 376 398 376 398 0.98

4 11 3.1e-06 0.00022 21.0 0.6 1 23 404 426 404 426 0.98

5 11 2.4e-07 1.6e-05 24.5 0.9 1 23 432 454 432 454 0.98

6 11 9.6e-06 0.00067 19.4 1.8 1 23 466 488 466 488 0.98

7 11 5.9e-08 4.1e-06 26.4 2.9 2 23 495 516 494 516 0.98

8 11 1.3e-07 8.8e-06 25.3 1.6 1 23 522 544 522 544 0.98

9 11 1.7e-05 0.0012 18.7 2.0 1 23 550 572 550 572 0.95

10 11 4.3e-05 0.003 17.4 5.2 1 23 578 600 578 600 0.97

11 11 1.7e-06 0.00011 21.8 3.5 1 23 606 628 606 628 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0014	0.096	12.6	0.5	2	23	128	149	127	149	0.96
2	11	0.0026	0.18	11.8	5.0	2	23	218	239	217	239	0.95
3	11	6.4e-06	0.00044	20.0	3.1	1	23	376	398	376	398	0.98
4	11	3.1e-06	0.00022	21.0	0.6	1	23	404	426	404	426	0.98
5	11	2.4e-07	1.6e-05	24.5	0.9	1	23	432	454	432	454	0.98
6	11	9.6e-06	0.00067	19.4	1.8	1	23	466	488	466	488	0.98
7	11	5.9e-08	4.1e-06	26.4	2.9	2	23	495	516	494	516	0.98
8	11	1.3e-07	8.8e-06	25.3	1.6	1	23	522	544	522	544	0.98
9	11	1.7e-05	0.0012	18.7	2.0	1	23	550	572	550	572	0.95
10	11	4.3e-05	0.003	17.4	5.2	1	23	578	600	578	600	0.97
11	11	1.7e-06	0.00011	21.8	3.5	1	23	606	628	606	628	0.99

Sequence Information

Coding Sequence: ATGTTTATAGTCACGAAAGAGATCGACAGTGAGAACATTAGCAAATTGTGCCGCACGTGTTTGCGGGAAGACGGCGACAAAATGGTATGCCTGTTCGTTGGACCAGCTGGTTCCTCACTCGCCGCTAAATTACGATCTCTCTCTTGTTTGGAAGTCTGGCAAGGAGACGGCTTACCTGAAAAGATGTGCGACCGTTGTGTCACCAGAGCGGAATCAGCTCTTTTGTATCGAGAGCAATGTCGCGCTGCTGACAGGGCTTTGAGGCAAGCAGCATTGAAGGTATCCCGATTGACATCATACACTACTGTTTCCGGCTGCAAGCTCTATCAAAATCAGCAGAATCAAGGATTCATGCCTGTACAAAATTCTCACAAGACACTAAAATGTGTGGAATGTGGCGCAGTATTTATGAATTATCAGGAGCTATGTGCCCATAACCGACTCCATTTGCCATTTATTCAGGACAACATACCTATGCAACATATGCACATAGTGGAGTCTCAGAATCCATATCTTAATTTTACTCATGTCAGTTCAAATTTTGCAAACGATAACATTCCAAGTACGCAATTATCTCCATTAGTTAGACCAAATATGATGCATACTATGTCACTGAACGAAGAAAGTTCAAGTCGAGCTGCTTGTGCCTTACATTGTTCCTTGTGCAATCACACTTTTACCAATAGAAGACAGTTAATAAGTCACAATATAACGCACAGTACGGAGAGTGTCGATATGTCATGCGACAATGAAAACATAGAAATTTGTGAGAATTCTAATCATATCCCACAAAATTTAAGTTACGAAAGATCAATCCATTCCGTGGATAATCCTATTCAAAACTTGTCATATCAGCGATCCACCGTGGACGATACCGATGGAATACAGAATATAAACTTTCCAGAAAATATAGATCTTGATGGAGTCCAGGAAAGCAGTTCGGAACGTATGCAAAATGTAACGATACATTCCGAAAACGATGTGTCGATTGCCGAAAACTTGAGGTTTATAAAATCACCCGGAAAAGATAGGCAACTCGCGATTGAATATCATGGATGCCAAAGTGACGATAATTATAAAGAACCTCTCGACATAAAAGCCACGGAAGATGTTAATGCTAAGAAGCATCAGTGTGAAATATGCTCGAGACAATTTtcacaaaaatctaaattatttgCTCATCAGCTATCTCACTCTGGTCAGCAACCATTTAAATGTTTAAGTTGCGGCAAAGGATACGCATCGAAAAGCAAACTCAGTGCACATATGAGATTACACACCAAAATCAACGTACACCAGTGTAAGGTGtgcgataaaatattttcatatccgTCATACTTGGAGGAACATATAAAGGTccataataaaagtaataatacatCGCAGAACAAGGATTATGAATGTACGACTTGTAATAAACGTTTTcggcttttaaaaaatttgaaagctCACGAAAGACTCCATACCGGAAAAGGTTTAGTGCAATGTGAAAtttgtgataaaaaatttagtcATAATTATAATCTGAAAATGCATTTGCGAACACACAAAACATCAAGAGTACATAAATGTGAGTATTGCGATAAGCGCTTCGTACAGAAAGGTAATTTGGTCGAGCATTTGCGAATTCACACTAAAGTGAAGCCTTTCGCGTGTACATTGTGCAGCAAGAGATTTGCGCAATCGAGTCACCTTAAAAGCCACGAAGCCTCACACGGTACATTGAGGCAACATCAATGCCGATTATGTGGTAAGAGATTCAAACTGGCCAATCATTTGAAACGGCATTTAAATTTACACACCGGTACAAAGACTTATAAGTGCAATCAGTGTAACCAAATATTTTCGCAATCTTTTAGTTTAACGAGACACTTAAAGAAACATAATGAATcgcatatataa
Protein Sequence: MFIVTKEIDSENISKLCRTCLREDGDKMVCLFVGPAGSSLAAKLRSLSCLEVWQGDGLPEKMCDRCVTRAESALLYREQCRAADRALRQAALKVSRLTSYTTVSGCKLYQNQQNQGFMPVQNSHKTLKCVECGAVFMNYQELCAHNRLHLPFIQDNIPMQHMHIVESQNPYLNFTHVSSNFANDNIPSTQLSPLVRPNMMHTMSLNEESSSRAACALHCSLCNHTFTNRRQLISHNITHSTESVDMSCDNENIEICENSNHIPQNLSYERSIHSVDNPIQNLSYQRSTVDDTDGIQNINFPENIDLDGVQESSSERMQNVTIHSENDVSIAENLRFIKSPGKDRQLAIEYHGCQSDDNYKEPLDIKATEDVNAKKHQCEICSRQFSQKSKLFAHQLSHSGQQPFKCLSCGKGYASKSKLSAHMRLHTKINVHQCKVCDKIFSYPSYLEEHIKVHNKSNNTSQNKDYECTTCNKRFRLLKNLKAHERLHTGKGLVQCEICDKKFSHNYNLKMHLRTHKTSRVHKCEYCDKRFVQKGNLVEHLRIHTKVKPFACTLCSKRFAQSSHLKSHEASHGTLRQHQCRLCGKRFKLANHLKRHLNLHTGTKTYKCNQCNQIFSQSFSLTRHLKKHNESHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01016013;
90% Identity: iTF_00128419;
80% Identity: -