Tcor004269.1
Basic Information
- Insect
- Trachymyrmex cornetzi
- Gene Symbol
- -
- Assembly
- GCA_001594075.1
- Location
- NW:37170-38087[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.5e-08 4.5e-05 22.5 0.1 8 45 31 68 28 68 0.92 2 3 6.3 6.3e+03 -3.6 0.0 36 45 133 142 131 142 0.79 3 3 5.4 5.3e+03 -3.3 0.2 32 39 237 244 236 245 0.86
Sequence Information
- Coding Sequence
- ATGCCGCCACCAAAGaaatcaattaaaaagaaaaaagagacaACAGGAAGaagaacattttttaagtattctcTGCATCAAGTCCGAAACGCTTTGAATGCTATTCGCAGTGGAACTTCTATTTCACTGGCAAGTAAAACTTTTGATGTTCTACGTACAACATTgaaacggaaaattaaaaactCTACGCTAGAAACATCGAGACACATGGGTCCTCCTCCAGTCCTTGGCTCTTACATCGAAGAAAAGTTATCTACGTGGGTGATTGAAACAAGTCGAGTGGGCTTTCCAAtcgaaaaaatatgtttacttTACTCAGTAAAACAATTGGTCGATgctgaaaatttattaactccttttaaaaataatctccCTGGAAGAGAATGGTTTGAGTCATTCATGAGAAGACATCCACATTTATCACAGAAGAAAGCCGAATATTTAAGCAAGGTGCGAGCGACTATCACGGAAAATTCTATTCGCAACTGGTTTGCAGATACTGAAACTCTGGTTGGAATTAATATACAAGTGTTACAGCATCCTCGTCGAATATTTAACATGGATGAAACTTCATTCTTTCGCCCCAAAGGTGGAATCATTCTAGCGAAAAAGGGAAAAGCCTCGTATGATGTGTTTTCTGCAAGCGATAAAGAAGCAATCACGACATTATTTGTCATTAACGCCGAAGGAGAAATTGCACCACCTTTGACTCTCTACAAGTACGTACGCTTGACTAAAAACTGCATAGAAGCTGTTCCTCCAGGGTGGGGACTAGGAAAAATCGAAAACGGTTGGATGGATAGTGCATCGTTCTACGGATACATTGCAAACATATTTCACCCATATCTATTAGAACAGAAAATCCCTCTTCCCGTCATAGTCTTTTTGGATGGTCATGTATCACATCTCTCACCTTAG
- Protein Sequence
- MPPPKKSIKKKKETTGRRTFFKYSLHQVRNALNAIRSGTSISLASKTFDVLRTTLKRKIKNSTLETSRHMGPPPVLGSYIEEKLSTWVIETSRVGFPIEKICLLYSVKQLVDAENLLTPFKNNLPGREWFESFMRRHPHLSQKKAEYLSKVRATITENSIRNWFADTETLVGINIQVLQHPRRIFNMDETSFFRPKGGIILAKKGKASYDVFSASDKEAITTLFVINAEGEIAPPLTLYKYVRLTKNCIEAVPPGWGLGKIENGWMDSASFYGYIANIFHPYLLEQKIPLPVIVFLDGHVSHLSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -