Tcor000996.1
Basic Information
- Insect
- Trachymyrmex cornetzi
- Gene Symbol
- -
- Assembly
- GCA_001594075.1
- Location
- NW:316960-319455[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-10 1.2e-07 30.7 0.0 2 42 20 60 19 62 0.92 2 2 2.8 2.8e+03 -2.4 0.0 12 26 375 388 374 388 0.87
Sequence Information
- Coding Sequence
- ATGCCAACAAGAATGCCTCGAATGTATACGAGGAAGACTAATCGGGCTACCTGGAGTCAGGATTCATTAACAGAAGCTATTGATCagatttctcaaaataaaatgaatatatggaatgcttcaaaatattatgatataccTTATCGGACTCTTAAAAGGCGGATCAacgaaaataatttcaataaaggAGCTCTAGGTCGACCGGCTTTTCTTGGTGATCATGAGTCAAAACTCATAACTTATATACAGAAGATGGAAAATACAGGGTTTCCACTGACTGCAAATGCTATCCGCAAATTAGCTTTTACGTTTGCATTAAAGAATAACCTTCTTAATAAATTCAGTCAGAATACAGAAATAGTTGGATATGACTGGTTTTGTAGTTTTATGAAACGACATcctaaattatcaataaaaaaagccGAAGGAATTTCTGTTGCTCGTGGATTAGGTATGTGCCGAGAAGAAGTTGACAATTATTTCcaacttttattgaaaatatgtgaggagaataatctcTTTGATCAACCGTTCAAAGTTTATAATGTCGACGAAATCGGTCTGCAATTAAATAACAATGTGAGCAAAGTTGTTACAACCAAAGGGTCACAAACAGTACATCATGTAACTTCAGCAGAAGAGGGGGAAACTATCAATGTTATTGCCTGCTGTAATGCCGAAGGGAACTTTTTACCTCCTTATTGTATATTCAAAGGCCAAAGGAAAAGACCTGAATTCGAAGATGGACTTCCTCCTGGATCTCATGTTGAAATGGGAGAGACAAGCGCCTATGTAAATTGTCAATTGTTTCTCGCTTGGCTTAAGGATCATTTCATTCCACGTAAACAAAATGGGAAAGTGTTGTTAATATTAGATGGTCATACCTCGCATTGCTCAGACATCAATGTACTTGACTTTGCAgctaaaaatgatataattttactttgccTTCCAAGTCATACTACCCATTATTTACAACCATTAGACAGGTCATTTTTTAAACCTCTCAAAACATATTGGCAAAGAGTCGTTACTAATTGGATTATTAGTCATCCTGGACAAAGGCTAACTAGATACCAATTTGGAGATTTGTTATGTAATGCTTGGAACCTTGCAACAACAGTAAGCAACGGTACATCGGGTTTCAAAGCTTGTGGAATATTTCCATACAATCCTGCACAAATACCAGAGCATGCATTCAGAATATCTAATACTTCGGAAGAACTGAAAGATACCTCTACTGAGCCAAAAAGTAAAGTTTTGAATACATTATCGAACAACGAAGAATCAACCGATATCAGCCAAGTAACTTTATTTCTTGTTCAATCCGTATATGATCATAATGAAAATGTTGATGAACCATCGACATCGGTCAGTTGCCCTTTGACCAGGTCACAAGAATACAGAAAAAGTCTGAGAAAATAA
- Protein Sequence
- MPTRMPRMYTRKTNRATWSQDSLTEAIDQISQNKMNIWNASKYYDIPYRTLKRRINENNFNKGALGRPAFLGDHESKLITYIQKMENTGFPLTANAIRKLAFTFALKNNLLNKFSQNTEIVGYDWFCSFMKRHPKLSIKKAEGISVARGLGMCREEVDNYFQLLLKICEENNLFDQPFKVYNVDEIGLQLNNNVSKVVTTKGSQTVHHVTSAEEGETINVIACCNAEGNFLPPYCIFKGQRKRPEFEDGLPPGSHVEMGETSAYVNCQLFLAWLKDHFIPRKQNGKVLLILDGHTSHCSDINVLDFAAKNDIILLCLPSHTTHYLQPLDRSFFKPLKTYWQRVVTNWIISHPGQRLTRYQFGDLLCNAWNLATTVSNGTSGFKACGIFPYNPAQIPEHAFRISNTSEELKDTSTEPKSKVLNTLSNNEESTDISQVTLFLVQSVYDHNENVDEPSTSVSCPLTRSQEYRKSLRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -