Tcor011375.1
Basic Information
- Insect
- Trachymyrmex cornetzi
- Gene Symbol
- -
- Assembly
- GCA_001594075.1
- Location
- NW:130606-132483[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-11 1.8e-08 33.4 0.0 3 45 19 61 17 61 0.94 2 2 5.8 5.8e+03 -3.5 0.0 21 28 300 307 298 307 0.87
Sequence Information
- Coding Sequence
- ATGGCTAAAACTAAAAAGACGCAAATAAAAAAACGTACTGAGAGTTGGAACACAGAGTCCATGGAAGCTGCTCTTAAAGCAGTTGAACGGAATAAGCTCTCACAGAGAGCTATTTGCGAAAAGTATGGAATTCCTCGTAGGACCTTGCGTAATCATATGAAATCTGGCACACCTTTAAAGCGTCTAGGACGAAAGAGTATTCTTACTATAGAACAAGAGAAGGATTTATCACAGCGGATTTTGCGAATGGCAGATATTGGCTTACCTATAACTTTGAAGATGTTAAAATATCAGGTATACAAGTTTTGCACATTACATCAAATTCCTCATACGTTTAACACTATTGCGTGCACAGCAGGCAGATCATGGCTTACAGCATTTCTGAAACGCAATCCTAAAATTTCGAGAAGAAAGGCACAATTTATGAACCAAGCTCGTGctcaaaaattgaacaaatttattgtaaaagacCACTTTGAAAAGCTTAATAACCTTTTGACAGAgctagatataaaatttaagccGGAAAGGATTTTCAACATGGACGAAAAAGGCTGTAGATTGACGATGCATCATCAACCAACTGTTTTAGCTCAAAAAGGTGCTAAACGCGTCCACTTCATCGCAAACGAACATGCTGAAAATGTTACTGTAGTTGGTTGTGTGTCAGCTATAGGTAACGTGATTCCACCTATGATTATCTTTAAAGGTAAACGCGGAAAGCCAGAGTTCACTGATAATTTACCACCAGGAAGCATAATAAGCATGGCACCAAAAGGCTTCATAACTACTgagctttttataaaatttttgaatcaCTTTGCTTCTTTCAAACTTGCTGGAAAGATTCTGCTTGTTTTCGATGGTGCTGCCTCTCACCTTGATTACACAATTGTGGAAGCCGCTGACAAACACGATATTGTACTGTATTGTTTACCATCCAATACCACCCATGAATTACAACCACTTGACAAATcagtttatagatcttttgagCACCATTGGGACCAGgaatttctaaaatatcaagataaacATCCAGATAGAAAATTCAACAAAACGAGCTTTAATATAGTGTTCTCAGAAGTGTGGTCGAAATGCATGACTCAATCTAATATAACAAATGGATTTAGAAGTGTAGGGTTGTATCCATTTGATCCTGAAGCCATTCCAGACTCTGCTTTTGCTCCATTAGTTCTAACAGAGCGTCCAACAATAGAAAATCAAACTCCAAACATAGCGGTAAATTCATTAATAGTCAGTGACGACATTCCGTTAGCCGAattattaaacaagaataaagaaaatcaaTCAACTGTTTCAAAAACGCCGTTCCAAAAACTTATAACAACTCCAAAACGCAAAGATTTCTCAGCTGGGAACTCGCAAAGAAAAAAAGCATTAAATTACAAAGCACAAAAGGTAACTAAAGATCTCTTCAAGAAGCAATATGACAAAAAGTCAGATCGACTTTCAACATCTAAAGCTATCACTCACTCCACTCCAACAGTTACTTGGTACTGTACGGCATGTAAAGAAGATCGTATGGAGGATATGAGGCAatgtactaacaataagtgTAATATAATGGTACCACGAGTTATATGTGGGACTTACACCACAAGATACAGATTTTCAATGCTGTTAATATTTTGa
- Protein Sequence
- MAKTKKTQIKKRTESWNTESMEAALKAVERNKLSQRAICEKYGIPRRTLRNHMKSGTPLKRLGRKSILTIEQEKDLSQRILRMADIGLPITLKMLKYQVYKFCTLHQIPHTFNTIACTAGRSWLTAFLKRNPKISRRKAQFMNQARAQKLNKFIVKDHFEKLNNLLTELDIKFKPERIFNMDEKGCRLTMHHQPTVLAQKGAKRVHFIANEHAENVTVVGCVSAIGNVIPPMIIFKGKRGKPEFTDNLPPGSIISMAPKGFITTELFIKFLNHFASFKLAGKILLVFDGAASHLDYTIVEAADKHDIVLYCLPSNTTHELQPLDKSVYRSFEHHWDQEFLKYQDKHPDRKFNKTSFNIVFSEVWSKCMTQSNITNGFRSVGLYPFDPEAIPDSAFAPLVLTERPTIENQTPNIAVNSLIVSDDIPLAELLNKNKENQSTVSKTPFQKLITTPKRKDFSAGNSQRKKALNYKAQKVTKDLFKKQYDKKSDRLSTSKAITHSTPTVTWYCTACKEDRMEDMRQCTNNKCNIMVPRVICGTYTTRYRFSMLLIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -