Tcor003629.1
Basic Information
- Insect
- Trachymyrmex cornetzi
- Gene Symbol
- ttk
- Assembly
- GCA_001594075.1
- Location
- NW:1161905-1165091[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.6e-15 8.6e-12 44.0 0.1 1 45 352 396 352 396 0.96
Sequence Information
- Coding Sequence
- ATGTTTGCTTCGCAACAGTACTGCCTCCGATGGAACAATCATCGCTCGAACCTGCTGAACGTCTTCGAGGAGTTGCTGCACAACGCGGCGTTCACCGATGTCACCCTTGCCGTCGATGACGGCAGGACGGTCAAGTGTCACAAGATCGTGCTGGCTGCGTGCTCGACGTATTTCCAGACTTTGTTTCACGAACTGTCAGGCTATAATCACCATCCAATAATCGTCCTTAAAGACGTTGGATTTCCGGCGATAAAAGCGATATTGGAGTACATGTATCGCGGCGAGGTGAACGTGGCGCATGAACAGTTATCCGAACTGCTGAAGATCGCGCAAGTACTGAAAGTAAAAGGCCTGGTTGAGGAACGCGGTAGCAATACGCCGAATACGTCGAATACGCCGCACGATCCTCGCCCTGAGGATACGTCGGTATCGCCGCCACCCGATATCAGTACCAGTACCAGCACCGGCGGCGCCAGCCACTCGTCACCGCCGTCTTACTACTCCCTTTACGGGAACTCGCAAGATCGCGGTTCAAGTCACCTGGCAAGTTCATTACCAACCGGCTCGTGGCCGTTGTCGTTACATTCCACGGGTCATCAGCTTCCAACTTCGCTCTCCTCCGTTCTTGACGGAGGTGGCGGGAGCGGCAACAGTGGCGGGTCCTACAACAACGGTATCGAAACCTCGCCGTTCAAACGCCGGAAGCTACTGCAGCCTCCGTCAGGCCTGCTGATAAGTAACGACACGCCGATATTGCGCACGGTACTTGGCCAGGCTCACGCTGACAGTTCGCAGGCTCTGCCACTCTTGCAACCAGACAGCCATGAACCAGTCAACTACCGCAACGCAAACAGCAATGGATCCACAAACGACAGCGACAACCGCCGCAACAACGACCTGGCTCACGGTGAAACGACGGTCTACGCCGATGCCTCCTACGCAGACGAAGACGAAAGAAAATCGTCCCCGCAGTCTTACGCAAATACTGCAAGGAACTCAGCTGCTGCGGACTGCGTTCAGCCGAAACCCGAATGGAAACGTTATAAGCAATACACTCGAGATGACATCACCTCGGCGATCGAGGCAGTGAGAAAAGGTATGAGCGCCGTTCAGGCAGCGCGAAAATACCAAGTGCCATCACGTACGCTTTACGACAAAGTGAAAAAGCTGGGCATCCCTACATCGCGGCCATTCAAGCGCTCAGCAAGCAACGGAGGAAGCGGGGCTTGTTTCCCGTATGGCATCGGCGCCAACGTGAACGGCGCTCTTTATGACAACAGTGCCGGCAGTGCCAATGCCCTCTCTGAAAATGAGAACGAGAGTAAAGTCAACGTCACTGAGAGTTTGGCCGGCACGAGTGCCGCAGTTTTCGAAGCCACGTATGCAAAGACGAAGGACCGCGGCGACTCAATGTCAGACTCGATGGCCAGTTGCAGCTCGAGTCCGGTGATACGTGGCGTTAAGCAACAGCAGGACCTGGATGATCAAGTAGAGGACTTGTCGGTGAGTCGCAAATCCGACGTTCCAGTGATAGTACCGCCATCCACTACATCGACCGCGATTAAAGACGAGGCGCAGGAAACAGGATTGGACAGTAACGACTGTTGCGATTACAGTCAACTTTTACAGCCCAATGATAGAAGAAAATAA
- Protein Sequence
- MFASQQYCLRWNNHRSNLLNVFEELLHNAAFTDVTLAVDDGRTVKCHKIVLAACSTYFQTLFHELSGYNHHPIIVLKDVGFPAIKAILEYMYRGEVNVAHEQLSELLKIAQVLKVKGLVEERGSNTPNTSNTPHDPRPEDTSVSPPPDISTSTSTGGASHSSPPSYYSLYGNSQDRGSSHLASSLPTGSWPLSLHSTGHQLPTSLSSVLDGGGGSGNSGGSYNNGIETSPFKRRKLLQPPSGLLISNDTPILRTVLGQAHADSSQALPLLQPDSHEPVNYRNANSNGSTNDSDNRRNNDLAHGETTVYADASYADEDERKSSPQSYANTARNSAAADCVQPKPEWKRYKQYTRDDITSAIEAVRKGMSAVQAARKYQVPSRTLYDKVKKLGIPTSRPFKRSASNGGSGACFPYGIGANVNGALYDNSAGSANALSENENESKVNVTESLAGTSAAVFEATYAKTKDRGDSMSDSMASCSSSPVIRGVKQQQDLDDQVEDLSVSRKSDVPVIVPPSTTSTAIKDEAQETGLDSNDCCDYSQLLQPNDRRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00417696;
- 90% Identity
- iTF_01476347;
- 80% Identity
- iTF_01476347;