Basic Information

Insect: Trachelus troglodyta
Gene Symbol: -
Assembly: GCA_030142635.1
Location: JARQTJ010000385.1:1817984-1824921[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00045 0.033 14.8 3.6 3 22 14 33 12 33 0.94

2 11 3.9e-05 0.0029 18.1 3.6 2 23 42 63 41 63 0.97

3 11 0.00016 0.012 16.2 0.1 1 20 118 137 118 139 0.95

4 11 0.006 0.44 11.2 2.5 1 21 163 183 163 184 0.94

5 11 0.54 40 5.1 0.2 1 13 192 204 192 205 0.89

6 11 0.013 0.96 10.2 1.8 1 21 256 276 256 277 0.95

7 11 0.014 1 10.1 0.6 1 23 288 311 288 311 0.96

8 11 6.1 4.5e+02 1.8 8.2 1 23 318 341 318 341 0.97

9 11 0.0058 0.43 11.3 0.1 1 21 488 508 488 509 0.96

10 11 0.49 36 5.2 0.1 1 19 576 594 576 597 0.78

11 11 0.0064 0.47 11.1 0.6 1 21 607 627 607 631 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00045	0.033	14.8	3.6	3	22	14	33	12	33	0.94
2	11	3.9e-05	0.0029	18.1	3.6	2	23	42	63	41	63	0.97
3	11	0.00016	0.012	16.2	0.1	1	20	118	137	118	139	0.95
4	11	0.006	0.44	11.2	2.5	1	21	163	183	163	184	0.94
5	11	0.54	40	5.1	0.2	1	13	192	204	192	205	0.89
6	11	0.013	0.96	10.2	1.8	1	21	256	276	256	277	0.95
7	11	0.014	1	10.1	0.6	1	23	288	311	288	311	0.96
8	11	6.1	4.5e+02	1.8	8.2	1	23	318	341	318	341	0.97
9	11	0.0058	0.43	11.3	0.1	1	21	488	508	488	509	0.96
10	11	0.49	36	5.2	0.1	1	19	576	594	576	597	0.78
11	11	0.0064	0.47	11.1	0.6	1	21	607	627	607	631	0.91

Sequence Information

Coding Sequence: ATGTACACAAGAAAACCACGCGGTGAAGGCTACTTGTTTTGCAATAAATGCGGAAGGCGATATCATCAGAAAAAGACACTGAACAGACATCTGAGAAAAGAGTGCGGAAGAGAACCGACTTTGCAATGCTCCTATTGCCCATATAAATCTACGTATAACAGTCATTTAAAGATACACATGAAGAAACACAAAAAACgtCAAGATTACAGTCCGGCCAATTGGATCGTGCCCACCTTGCCATCGACCTCTCGCAAGGAGCATTATTCCCGTCAACTTCGTTCGATGTGTAAGGACGACGTATCCTTATCGGATAAGGAGAAATCGAAAAAGTGCAGTAGGGGCCCACGACAATATCGTTGCGCGGATTGCGGCAGGACTTTTGCCCTTGCCGCATCCTTGTCACGTCACAGGTCCTTGGAGTGCAACGGGCAGCGGTCGTCCCGGACGTTGAAGAGAAATGAATCCTTCGGCAAGAAGCCAAAATATCACAAGTGCAACAGATGCGAACGTTCCTATAAATTTTTGACGTCATTATGGCGTCATAAGAATATGGAATGCGGCGTGGAGCCAAAATTTGCTTGTCCAATCTGTCAAGTTAGGTTTGCTCAGAAAAAGATTCACGGATGGAACGTCAGAGGATACCTGCACGACTACGGTTCAACGGAGAACGCAGAAGGATCCGTTCAGGCGATAAGCAGTATGGAAATTGCAGATTTCAAACTTCTGGATAATAAATCGATAACAGTTGAACCCAGCTACAAGAGACACGTCTGCACCTACTGTAAGAAAGTCTATCTGCTCAAGAACCTTCTGAAACGGCACATGCAATATTCCTGCGAGATGATACCGAAGAGTGCACAATTCGCGTGTACATTCTGCCCCTACAAAAGCATGTACAAAGCCAACATGGAGAGACACGTGAGAAACGTCCACGACGCCGGTGCCATGAAATTCCATTGTGAGCTCTGTAACTTTCGCAGCAACTACACGTTCTGCGTCCGTCGCCACATGAAAACCTTCCACAACCGTCCTGGTCGTACAAAGCCATGTTCGGATTCGATGCCAGCAACGTTATTATCCAGCGGAACTCGACACGTGTCAGTTGTGACGTCCGAGGACGGATGTTTCACTGCACGGACTGTGGGAAGTCTTATGCGGTTCAAAGGTCACTCTGGAGACATCGTAAATTCGAATGCATCAATTCACGGCCTAAATTCACCTGTGAGCTGTGCCCGTACAAGAGCTCGCACAAGTGAATTTCCTGTCGAGAATttcgaagacgaggacgagtgCTTGACCAATGACGAGGAGGAGCAGATGTCTAAGGAAAGTTTTGTCAAAGTTATCAAAACGCCGATAACGAACGTCAAGGGAATTTCGGAATTATTCGAAGTGTCGAAGGAGGGTGAGATTATATTAAagtctaataaaaatcatattctCACCCTGAAGGATCCGACCTACGAGTGTGAGTCCTGCGGGAAAACGTACGCCTGGGCTACGTCTTTGAGCAGACACCGTAGGGAATGTcaagagaggaagaaattACTTAAGCAAACCGAAGAGATAAACAGCGAAGAAGAAATCATAAAAGATTCCATAGAGAATCCAGGCTCTTCGATGTCATCTCCTCACGATGACGAAGATATGGTCCAGGAAGATGCTGTGGCGAAATACAAGCCACGATTTCGCGAATTGCAAAAATACGTGTCGAAAGATGGCGTATACTCGTGTTGGGACTGTGGCAAGTACTACCTGTGGGCCTCTTCTTTGTCCAGACACAGGACCATCGAGTGTGGAcctaagaataaaaaaagattcgtcTGCAATCTTTGTAATTATCGTACAGGATACAAAGGAAATTTTGTGAGACACCTAAAAGCACCAAGACACATAATGCACAGCAGTttagaaaagaagagaatgcAAATTGCTacgatgaaaaagaagaatatcaGCGAGAAGGTTGATGAAGAGTTAGAAGAGACAgcttaa
Protein Sequence: MYTRKPRGEGYLFCNKCGRRYHQKKTLNRHLRKECGREPTLQCSYCPYKSTYNSHLKIHMKKHKKRQDYSPANWIVPTLPSTSRKEHYSRQLRSMCKDDVSLSDKEKSKKCSRGPRQYRCADCGRTFALAASLSRHRSLECNGQRSSRTLKRNESFGKKPKYHKCNRCERSYKFLTSLWRHKNMECGVEPKFACPICQVRFAQKKIHGWNVRGYLHDYGSTENAEGSVQAISSMEIADFKLLDNKSITVEPSYKRHVCTYCKKVYLLKNLLKRHMQYSCEMIPKSAQFACTFCPYKSMYKANMERHVRNVHDAGAMKFHCELCNFRSNYTFCVRRHMKTFHNRPGRTKPCSDSMPATLLSSGTRHVSVVTSEDGCFTARTVGSLMRFKGHSGDIVNSNASIHGLNSPVSCARTRARTSEFPVENFEDEDECLTNDEEEQMSKESFVKVIKTPITNVKGISELFEVSKEGEIILKSNKNHILTLKDPTYECESCGKTYAWATSLSRHRRECQERKKLLKQTEEINSEEEIIKDSIENPGSSMSSPHDDEDMVQEDAVAKYKPRFRELQKYVSKDGVYSCWDCGKYYLWASSLSRHRTIECGPKNKKRFVCNLCNYRTGYKGNFVRHLKAPRHIMHSSLEKKRMQIATMKKKNISEKVDEELEETA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00297112;
90% Identity: iTF_00294801; iTF_00297112;
80% Identity: -