Ttro007332.1
Basic Information
- Insect
- Trachelus troglodyta
- Gene Symbol
- -
- Assembly
- GCA_030142635.1
- Location
- JARQTJ010000433.1:1305869-1308845[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 9.6 7.1e+02 1.1 0.1 1 19 380 398 380 403 0.76 2 13 0.16 12 6.8 2.5 1 23 430 452 430 452 0.97 3 13 0.00084 0.062 13.9 2.4 3 23 459 479 458 479 0.97 4 13 3e-05 0.0023 18.4 1.8 1 23 485 507 485 507 0.99 5 13 0.00079 0.059 14.0 1.0 2 23 515 536 515 536 0.97 6 13 2 1.5e+02 3.3 0.0 7 22 547 562 543 562 0.91 7 13 6.1e-07 4.6e-05 23.8 3.0 1 23 597 619 597 619 0.98 8 13 1.6e-05 0.0012 19.3 0.6 1 23 625 647 625 647 0.98 9 13 0.0003 0.022 15.3 4.7 1 23 657 679 657 679 0.98 10 13 3.6e-05 0.0027 18.2 0.2 1 23 686 708 686 708 0.97 11 13 0.039 2.9 8.7 0.3 1 23 714 737 714 737 0.93 12 13 0.32 24 5.8 6.4 4 23 746 765 746 765 0.97 13 13 0.014 1.1 10.0 0.3 1 16 771 786 771 788 0.87
Sequence Information
- Coding Sequence
- ATGGTTAACCGAAGATGTTCCGCCAAAACATGTTTCAACGAATCAATTTCGAGACCtgacttgaaattttttccattcccGAAAGCGGAACATGAcGCTCGTATTTGGGCTGAAGCTTGTGATAGACCTGAACTTATGAACAAGAGTCTAGATATACTACGCCGATATGTTCTTTGCGCTGAACACTTTGAGGATCGTTGGTTCATTAATCCACCACACAATACAGCATTTAATAAAACAGCACTTCCGATACCAACGATATTTCGGAATAATATCAAGGAGATTTTAGTTCATCAACGAAAAAACTTATCAGTATCTAATGTTGATGCTGCTGCCACAAACGATACAACGGAACAAACGGAAACTGACAATATGACTATGACGCAAAATTGGAGATTAAGCACAGAAGCAGAATTCAATTCACAATCGgaagaCAATTCTAAGGAAGACCAGAGGAATTTGGATTTAGTTAGCAATGCTACTGAAGTTAATAAGGAAGATAACACTCATAACTTCTGTAGACTATGTGCATGCTTAATACCAGCCAGTTTATTGAGCTCTATTTATGATACGCACATGAAtctaaagataaataaaatattaccaaacGAGGCTCATCTATTCAAGCACGATGGATTGGCTGAGGAAGTATGTAAGTCTTGCACAGATAAATTGACTGTCTGCAATGACACAATACAACAATTTATAAAtgcaagtaaaaaattaagagagttaaaaaaaaatcgggtGGAGGAAAGTATTAATCGGTCATTATCATCAGAAAGTACTTGTCGCACAGAAAATGATACATCTcatccaaaagaaaatttacaaatcaATTCGAGTCAATACTATGATGTAAATCTGAATCATAAGTCTGATACAACCATTGTGGATATTAAAGaAGAGGATAGTGTTGGTgtagaaaatgaattaaataacaCTGAAATATCTTTCCAAGAAACTAAAACTGCAAGTGTGAACTCACAGAAACCGTCGTTGTCAAAGTCAGTATCTTTGAATAGCAGTAATAGCGAAGATACACtagaaatttctcaaattgcaataacaaagaaaagtaCGTTATCGGAATATCGATCAAATTCTAACAGAATCAAGTGTCCTGAAATTACAGTATTTAAATGCATGGCATGCAATAAGGAATTTCTTGATAGAAATTCAGTAGTGGAGCATAGTATAGCAATCCACGCaatcaaaagtaaaaaacaCGAGGTAAAATATACCGTgactaacaaaaaaattgagaagaggagaaaattaaaaaattatcactgtACCAGCTGCCCCTTGGAATTTACTAATTATCAAACTTATCGACCTCACATGAAGTGGCATCCGTCAAGGAACAATATGTGCGAATACTGCGACAGATGCTTCATATTACAAAGCAGATTAGAATCTCACAAACGATGGCATTTCCGTGAAAAACCATATCAGTGCAATATTTGTAACGAGTCATTCGTCTTCATTAACAGTCTTAAGCGTCATAAAAAGTCTCACATGGGGGACATGTCATTGCGTAAATGTAAAAGATGCAACAAAGTATTCCCCACGATAGCTCTTATGCAAAGACACACTAAAGCCCATTACGAAAAGAGCGTCTTGTGCAATTTATACGGAAAACGTTTGTCCTCTCcacaaaatttacaatatcatATGGCAACGCAAAGCGAAGAACGACCATTTTCCTGTACGATTTATTCAAAATCGTTCAAGACCATCagtaaattaaattgtcaCAATAAAAAACATCAACTAGATCATAGATTCGAATGTAATTTATGCAACAAGAAATTCCGTATGAAATCGTTGCTTAAACAACACATGAATACGCATTTGGGTGAGAGACCTTATGTTTGTGAAATGTGTGGTGCTCGATTCAATGGATATGGAAATCTTACTAAACATAGAAAACGGCATGCGGTATCATCAGCATTAGAATCATCATACACTTGTGATATTTgtcataagaattttaaaactGCATTTGCATACAAGTATCACACGATGAAGCACAGTGCAGAGCGAAAGCCATACTCTTGTGATATTTGTGAGAAACCTTTTAGGCAAATTGCACAGTTGAGAGTTCATAATAGATTGCATACCGGTGAGCGATCTTATGCCTGCACTGAGTGTGGTCAACGATTTTGGACAAAAGCAACAATGGATCAGCATTATGTAACTTTGCATACAGATAATTATCCACATGAATTTCCTTATTGCGATAAGCATTTTAAACGGCTGCATTCATTAAACTGTCATAAGAAAACTCATACTGAAGAACGTCCACACGTGTGTCGGATTTGCCATCGTACATTTacacaaaaaaatgatatgttgaaatatatgaaaatacataGTCGAAGGGATTTAGACAGTCATTTTCGAAGAGCACATAATCAATCATCGAATAGTGACTTTCTTGAGGAATCAACTACCGTCACGGAAGATTCAGAATGGATGACAGAAGTGGTTTGTAGCGAGGAGGATATAACAAATGATTATCTAATGACTGATGACGAATTGAGAACTGAATACAATTAA
- Protein Sequence
- MVNRRCSAKTCFNESISRPDLKFFPFPKAEHDARIWAEACDRPELMNKSLDILRRYVLCAEHFEDRWFINPPHNTAFNKTALPIPTIFRNNIKEILVHQRKNLSVSNVDAAATNDTTEQTETDNMTMTQNWRLSTEAEFNSQSEDNSKEDQRNLDLVSNATEVNKEDNTHNFCRLCACLIPASLLSSIYDTHMNLKINKILPNEAHLFKHDGLAEEVCKSCTDKLTVCNDTIQQFINASKKLRELKKNRVEESINRSLSSESTCRTENDTSHPKENLQINSSQYYDVNLNHKSDTTIVDIKEEDSVGVENELNNTEISFQETKTASVNSQKPSLSKSVSLNSSNSEDTLEISQIAITKKSTLSEYRSNSNRIKCPEITVFKCMACNKEFLDRNSVVEHSIAIHAIKSKKHEVKYTVTNKKIEKRRKLKNYHCTSCPLEFTNYQTYRPHMKWHPSRNNMCEYCDRCFILQSRLESHKRWHFREKPYQCNICNESFVFINSLKRHKKSHMGDMSLRKCKRCNKVFPTIALMQRHTKAHYEKSVLCNLYGKRLSSPQNLQYHMATQSEERPFSCTIYSKSFKTISKLNCHNKKHQLDHRFECNLCNKKFRMKSLLKQHMNTHLGERPYVCEMCGARFNGYGNLTKHRKRHAVSSALESSYTCDICHKNFKTAFAYKYHTMKHSAERKPYSCDICEKPFRQIAQLRVHNRLHTGERSYACTECGQRFWTKATMDQHYVTLHTDNYPHEFPYCDKHFKRLHSLNCHKKTHTEERPHVCRICHRTFTQKNDMLKYMKIHSRRDLDSHFRRAHNQSSNSDFLEESTTVTEDSEWMTEVVCSEEDITNDYLMTDDELRTEYN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00291763;
- 90% Identity
- iTF_01475523; iTF_01474161;
- 80% Identity
- iTF_01475523;