Ttro010495.1
Basic Information
- Insect
- Trachelus troglodyta
- Gene Symbol
- -
- Assembly
- GCA_030142635.1
- Location
- JARQTJ010000623.1:586212-589176[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.044 3.3 8.5 0.5 6 21 12 27 8 28 0.90 2 14 6 4.5e+02 1.8 0.2 2 20 34 52 33 57 0.88 3 14 0.61 45 4.9 0.3 1 12 247 258 247 267 0.89 4 14 0.14 10 6.9 0.7 1 20 375 394 375 396 0.94 5 14 0.0012 0.085 13.5 0.2 2 23 401 422 401 422 0.97 6 14 0.0027 0.2 12.3 2.3 2 23 434 455 433 455 0.94 7 14 0.15 11 6.8 0.2 1 23 474 495 474 495 0.83 8 14 0.0009 0.067 13.8 0.0 2 23 501 522 500 522 0.95 9 14 5.5e-05 0.0041 17.6 4.8 1 23 565 587 565 587 0.99 10 14 2.4e-06 0.00018 21.9 3.7 1 23 593 615 593 615 0.96 11 14 0.00027 0.02 15.4 4.1 1 23 621 643 621 643 0.97 12 14 1.7e-06 0.00012 22.4 0.8 1 23 649 671 649 671 0.98 13 14 0.0001 0.0078 16.8 0.2 1 23 675 697 675 697 0.99 14 14 0.00045 0.033 14.8 0.2 1 23 705 727 705 727 0.97
Sequence Information
- Coding Sequence
- ATGGGATCGCTGAGTCTTCTTTGTCCCATGTGTTGTGGGGAGAGTTTCGACAACTCACAGAcattaaaaagtcatttgttaAGCATGACAAACAACTTATACTGTCCTCGTTGTTCTGAGAGATTGGACTCGGTAATGGCTCTTATTCAGCATTTAGATGACTGTGGTCATGGTACAGAGGCTGCAATGCATTTGGTTGCTGAAGTCGATCCTGAATTGGAACCAGAACTAGAGGTAGAACCTCAAATAGAAGCCGAGTCAGAAATTGACGAGTCAAAGGAAGAGACAGAAGTTTTAATGGAAGCTAGTGTTGAGCAGATTGATCAAGGATTTTTAGCAGCAGTAAACGATGGAAAGATAATGATAGTTGGTGGTTCTCGTACGATACAAGTAGATGAAAATGGCCAAATCGAAGTAGTAGAAAAAATGGATACAGAATCAGAGGAGCTTGAGGTACCGTCATCCATACAAAACATGGAGAAGCTCTCTCCGATTAATGAGCTTTCTGAAGAAAAGGATACTTCTAGAGACTCACTGGCCAATCTGACATCTACAGCCAATGGCATTAAGTCAGAGAGAAAAGATATGATATCCATTTTACCAGACAATTCAGATCTCCTCAATGAAGAGGATGACACTTTGATGGGCATGGACCATGTTAACGACGTCCAAGAATTGAATGATACTGGGCTTCTAGAAGTCAAGCAGGAACTATGCGAGATAGAATCCGAAGCACTCTATAGTTGTAGCAGTTGTGGAATGAGTTTCAATTCCGTCCTGGAACATATAAAGCAATACCACGATGGACAGGAAGTTGTTCTCGAAATGGCTGAACAGCAACTAGACAGTATCGCAGCCTCAGTTGAGCCAGCCGTTCTTGAAGAACCAACCGCAATCATACCGCCTCGGCAACGGCAAACAATGAACACTCTACGCACTGAAGAATGCGTTGACAGTGAAGGAAGACTCTATACCAGAAAGGTTGTGCAGATAGAAAGATTTTGGGACCGTCCAATGAGCGGAAGTCGTTCCTCCAAAGCACCAATGATAGAGAAATTCTTCTCTAACGCTGAAGGTGTCAAGGTACGCGATAAAACGGTAACGGCAGCACCAGTAAGGATGTACCGTTGTAACCAGTGCTTGGAGCAATTTCCAAAGCTTGGGGATTTTCGCGTCCACGCGTGCCTTCGTGGTACTAATCGGTGTGATCGGTGCGATCAGGCGTTTGCAACTGCACGCGCGTTGCAGTTGCATTCAAAGGTGCACGAAGTCGACAGCAATGGTGGTCAAAGGGTCTTCCTTTGCTCTGCATGTGGTACAGAGTTTTCTTCCCATAAGAGTCTACGACTTCACTCAAGGATGCATGCGCCAGTGAGGTCGCGACATGTAGATGCTCCCGAAGGTACTCACAGTGCTACGTTTACCTGCCTAGAATGTGGGAAAACATTGTCGGAATCTTACAGAGATGCTCACATGGCTCTACACACTGGCGATTCTGTTACTTGTAGTGTAtgcaatagaaaatttgaCTCCGCAGACAGCCTTGCTATGCATGCAGCTGTCCATTCGGATGCTAATCGTTCTCATTCGCCCACACCTCCCGCTAGAGATATTAATGCATCCCCAGTAGATGCAGCGGCGGAAGCGGCTGCTGCAGAAAGCGGTGGTGGTGATATTGATAAGGAAAAACCATATCAGTGTCAACACTGTGGTAGAAGATTTACTAGGCCTCATGAGAAAGTTAAGCACGAGCGTATTCATACTGGAGAGAAACCACATGCCTGCGAAGTTTGCGGCAAAACTTTTCGAGTGTCTTATTGCTTAACATTACATATGAGAACACATACTGGTGTAAGACCTTATGCTTGTCAACACTGTGGCAAAAGATTCAAAGCTTCATCGGTTTACAATCATCACTTGCTCACTCATGGCGAGGAGAGAGCATATACCTGTCCGTACTGTCCCAAAACTTTCAAGACAAGAGTGCAGCTTGCAGGGCACAAAAACAGTCATACCAAACCTTTCCGATGCACAGAATGCTCTAGACCTTTTGCATCGTTATATGCAGCCCGTGCTCATATTCAGACTCACAAGAAGGATAATAACCTCAAGTTTAGTTGTTACATCTGTGGTGCATCCTATGGTCGTGCCTTTGCATTGAAGGATCATCTGAAGCAACATGGTCAGGACGTTCTTACACCGCCAGAACCCGCTCGCGAGGAGGAAGTTCGTGAGGTTGATGATTATTTACTTGCGGAGGAAGAGGCTGAGGACGAACTTGTTATACCTTCGCCTCTCCCGGGAGCACAGTCATCTGATGTCGAAGAGTCAGATTGA
- Protein Sequence
- MGSLSLLCPMCCGESFDNSQTLKSHLLSMTNNLYCPRCSERLDSVMALIQHLDDCGHGTEAAMHLVAEVDPELEPELEVEPQIEAESEIDESKEETEVLMEASVEQIDQGFLAAVNDGKIMIVGGSRTIQVDENGQIEVVEKMDTESEELEVPSSIQNMEKLSPINELSEEKDTSRDSLANLTSTANGIKSERKDMISILPDNSDLLNEEDDTLMGMDHVNDVQELNDTGLLEVKQELCEIESEALYSCSSCGMSFNSVLEHIKQYHDGQEVVLEMAEQQLDSIAASVEPAVLEEPTAIIPPRQRQTMNTLRTEECVDSEGRLYTRKVVQIERFWDRPMSGSRSSKAPMIEKFFSNAEGVKVRDKTVTAAPVRMYRCNQCLEQFPKLGDFRVHACLRGTNRCDRCDQAFATARALQLHSKVHEVDSNGGQRVFLCSACGTEFSSHKSLRLHSRMHAPVRSRHVDAPEGTHSATFTCLECGKTLSESYRDAHMALHTGDSVTCSVCNRKFDSADSLAMHAAVHSDANRSHSPTPPARDINASPVDAAAEAAAAESGGGDIDKEKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYACQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCYICGASYGRAFALKDHLKQHGQDVLTPPEPAREEEVREVDDYLLAEEEAEDELVIPSPLPGAQSSDVEESD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01131027;
- 90% Identity
- iTF_01131027;
- 80% Identity
- -