Basic Information

Insect: Trachelus troglodyta
Gene Symbol: -
Assembly: GCA_030142635.1
Location: JARQTJ010000420.1:547724-550393[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.034 2.5 8.9 0.0 1 23 359 381 359 381 0.95

2 11 7.1e-06 0.00052 20.4 1.2 3 23 450 470 449 470 0.97

3 11 0.00012 0.0091 16.5 0.2 1 23 476 498 476 498 0.98

4 11 0.00049 0.036 14.6 2.4 1 23 504 526 504 526 0.98

5 11 8.7e-06 0.00065 20.2 1.3 1 23 532 554 532 554 0.98

6 11 0.00034 0.025 15.1 1.3 1 23 560 582 560 582 0.98

7 11 6.4e-07 4.7e-05 23.7 0.5 1 23 590 612 590 612 0.98

8 11 0.0058 0.43 11.3 0.2 1 23 618 640 618 640 0.94

9 11 1.8e-05 0.0014 19.1 2.2 1 23 646 668 646 668 0.98

10 11 4.3e-05 0.0032 18.0 0.4 1 23 674 696 674 696 0.98

11 11 0.0011 0.083 13.5 5.2 1 23 702 724 702 725 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.034	2.5	8.9	0.0	1	23	359	381	359	381	0.95
2	11	7.1e-06	0.00052	20.4	1.2	3	23	450	470	449	470	0.97
3	11	0.00012	0.0091	16.5	0.2	1	23	476	498	476	498	0.98
4	11	0.00049	0.036	14.6	2.4	1	23	504	526	504	526	0.98
5	11	8.7e-06	0.00065	20.2	1.3	1	23	532	554	532	554	0.98
6	11	0.00034	0.025	15.1	1.3	1	23	560	582	560	582	0.98
7	11	6.4e-07	4.7e-05	23.7	0.5	1	23	590	612	590	612	0.98
8	11	0.0058	0.43	11.3	0.2	1	23	618	640	618	640	0.94
9	11	1.8e-05	0.0014	19.1	2.2	1	23	646	668	646	668	0.98
10	11	4.3e-05	0.0032	18.0	0.4	1	23	674	696	674	696	0.98
11	11	0.0011	0.083	13.5	5.2	1	23	702	724	702	725	0.95

Sequence Information

Coding Sequence: ATGGCCGTCGTCGAGGAATTCGATTACTTATGTCGGTTGTGTGCAACCAAGACAGGCATCCTGATGGGGCTGCCCATTTTCGAAGCCGGTGATCAGATGCGTAACATTGACAAGAAAATCGCTGCCTGTCTTCCCGTTCAGGTATCAATGACTGACCAGTTGCCAAAAGTTGTCTGCGAGGAATGTGCATACAAATTGGATCagttatttgattttcgtGAGAAGTGTTTGCATACCGAGGGTATGTTCATGAAAATGCTTAAAGAAATCAGTAAGGACGATGTTGTACACATTGACCATAATCTTGAAGAAGTTGATGACATACCCGTCATGCAAACAACCATTAACACAATACAAACGGATATCGAAGAGATACAGAATCATGCCAGTAGAACGCAACATGATACTGGAGAAGCTGCCATGCATACTATGCAGGTAATGGATGAAATGGATTTGGCAGGTGGGGAGCAAGTTGTTACGCAGGAAGATATTGCACAACAGGATGGTGACATTGAGGTTACTGGCATTGACTGTTTGGATGGCGATACTGTTCGGATGGTCGATGAGCATATTAGAGAAGTTTCAAATCATCAAATTGCAATGCACCTAGAAGGTGACATGACTGTGGTGAGCAACCTGACAGTTGGCGATCATCTTGATCAGTTGGGCATAAACTATGTAACTTCTATCAGCCCTCAGGATCAAAACAGAGAGCAGATAGTTCACTACTGTGAAAATGTGAAGTATGAACCTGTGACGGTAAAGGAGGAATACGAAAGGTTACAGGAGCGGTTAACCGTAGATGCTCAGACACAcgctattgaaaataatGTAACCACCGACGAGTTTCCTCCTTCGCACGCAGAAACAGACAGTGAAATCGAAGAGTCGGGCGTCAGTGAAAACGAAACTCACGAGAACTCGGATCCTCTACATACAAACGCGTTGCCGTCCACGAGTCAAGTAACGACTGAAAGTTCAACAATAATGGTAGAGTACTCAAAGAGAACAAAACATTCTTTACTTGACACAACCCTGAACAATCCAACTATAGATGAAACCGGAGCAAACTGGTACGTCTGTCCATTCTGTAACGAAGCAGCAACAGAACCCAACAATCTCGTGGTACATTTTGAACAACATTTTTGTTGTTGCCCATGTGGACTGTACTTCACTAGCGTGGAAGTACTGAATATTCACAAGCAGCAGTGCGATTTGCACAAGAGCAAGAGCATCATGAAGGAAGACATGGTTGCTGAAACAGATGCAAATACAGTAGCGAACAACGTCAATCAGGAGGAGCAGAAGAAGCAGCCAGCTGTAAGACAAAAATGGACACCAAAAATTTGTGCCCAGTGCGGCAAACAGTACAGAACCAATTACAAACTCCAAGAACACATGCGCAAACACACCGGGGAAAAGCCGTTCCAGTGTCTCCTCTGCGAGAAAGCATTTCGTAGCAAGATCGGATTGGCCCAGCACACGGCGACGCACACAGGTCAGTTCGACTATAATTGCTCCACCTGTGGCAAAGGTTTCCAGTGCAAGAGTTATCTGATCGTCCACCAGAGAGTGCACTCGGACCTAAAACCGTATCCGTGCAGCACGTGTGGTcagaatttcaaaacgaaaCAGTCACTTCTGGACCACCAGAACAGACATCTGGGGGTCAAACCGTACATGTGTGAGATATGCGGTCGTGGATTCATCACGAAGGGCCTTTGCAAGAGTCACCAGAAGATTCACTCGGGGATGGACAACCGCCAGTATCCTTGTGTCGTTTGTAACAAGATGTTCGTAAGCAAGAGCTACCTGAATACTCACCTCAGGATTCACACGGGTGAGAAACCCTACCTCTGCGAAGTCTGCGGCAAGGGTTTCCTGACCCGCGTCGACCTCAAGATACACTCGACGATGCACACAGGCGAGAAAAGTTTCAAGTGCGAGATGTGCGGCAAGGTGTTCGCGAGACGCGCTGCCCTGCGCTGTCATAGACGTTCTCATACAGGTGAGCGTCCTTACAGTTGCGACGTTTGTGGCAAAACGTTCACGCAATTCAGCCCAATGGCAATTCACAAGCGGCTGCACACCGGCGAGCGTCCTTACGAATGCGACGTATGTGGCAAATCCTTTGTCTCGAGGTCGACCATGATGTGTCATCGGAAGAAGCATCATTTGCCAGCAACGTCCGTTCCCAAGGAGGTGATGGTCGTTCACGAGGACGCTGAGGTTACAAACATCATGTCCACGGAAATTGTCCTTAGGGAATCGCACGAGGGCATTCAAATTACTgccgattaa
Protein Sequence: MAVVEEFDYLCRLCATKTGILMGLPIFEAGDQMRNIDKKIAACLPVQVSMTDQLPKVVCEECAYKLDQLFDFREKCLHTEGMFMKMLKEISKDDVVHIDHNLEEVDDIPVMQTTINTIQTDIEEIQNHASRTQHDTGEAAMHTMQVMDEMDLAGGEQVVTQEDIAQQDGDIEVTGIDCLDGDTVRMVDEHIREVSNHQIAMHLEGDMTVVSNLTVGDHLDQLGINYVTSISPQDQNREQIVHYCENVKYEPVTVKEEYERLQERLTVDAQTHAIENNVTTDEFPPSHAETDSEIEESGVSENETHENSDPLHTNALPSTSQVTTESSTIMVEYSKRTKHSLLDTTLNNPTIDETGANWYVCPFCNEAATEPNNLVVHFEQHFCCCPCGLYFTSVEVLNIHKQQCDLHKSKSIMKEDMVAETDANTVANNVNQEEQKKQPAVRQKWTPKICAQCGKQYRTNYKLQEHMRKHTGEKPFQCLLCEKAFRSKIGLAQHTATHTGQFDYNCSTCGKGFQCKSYLIVHQRVHSDLKPYPCSTCGQNFKTKQSLLDHQNRHLGVKPYMCEICGRGFITKGLCKSHQKIHSGMDNRQYPCVVCNKMFVSKSYLNTHLRIHTGEKPYLCEVCGKGFLTRVDLKIHSTMHTGEKSFKCEMCGKVFARRAALRCHRRSHTGERPYSCDVCGKTFTQFSPMAIHKRLHTGERPYECDVCGKSFVSRSTMMCHRKKHHLPATSVPKEVMVVHEDAEVTNIMSTEIVLRESHEGIQITAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00296225;
90% Identity: iTF_00296225;
80% Identity: -