Basic Information

Insect: Trachelus troglodyta
Gene Symbol: su(Hw)
Assembly: GCA_030142635.1
Location: JARQTJ010000350.1:3639-7270[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0047 0.35 11.6 0.2 1 20 63 82 63 84 0.94

2 13 2.7e-05 0.002 18.6 2.7 1 23 163 186 163 186 0.96

3 13 0.00069 0.051 14.2 0.4 2 23 193 215 192 215 0.95

4 13 0.0009 0.067 13.8 1.9 1 21 222 242 222 243 0.94

5 13 4.3e-08 3.2e-06 27.4 1.8 1 23 254 276 254 276 0.98

6 13 0.00042 0.031 14.9 3.7 2 23 286 307 285 307 0.97

7 13 0.041 3.1 8.6 0.7 2 23 314 335 313 335 0.96

8 13 1.6e-05 0.0012 19.3 2.5 1 23 341 363 341 363 0.99

9 13 6.5e-06 0.00048 20.6 1.8 1 23 369 391 369 391 0.94

10 13 1.3e-05 0.00096 19.6 0.9 1 23 397 420 397 420 0.94

11 13 2.3e-06 0.00017 22.0 0.9 1 23 426 448 426 448 0.97

12 13 1.7e-07 1.2e-05 25.6 1.1 1 23 454 476 454 476 0.99

13 13 1.5e-05 0.0011 19.4 3.1 2 23 483 505 482 505 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0047	0.35	11.6	0.2	1	20	63	82	63	84	0.94
2	13	2.7e-05	0.002	18.6	2.7	1	23	163	186	163	186	0.96
3	13	0.00069	0.051	14.2	0.4	2	23	193	215	192	215	0.95
4	13	0.0009	0.067	13.8	1.9	1	21	222	242	222	243	0.94
5	13	4.3e-08	3.2e-06	27.4	1.8	1	23	254	276	254	276	0.98
6	13	0.00042	0.031	14.9	3.7	2	23	286	307	285	307	0.97
7	13	0.041	3.1	8.6	0.7	2	23	314	335	313	335	0.96
8	13	1.6e-05	0.0012	19.3	2.5	1	23	341	363	341	363	0.99
9	13	6.5e-06	0.00048	20.6	1.8	1	23	369	391	369	391	0.94
10	13	1.3e-05	0.00096	19.6	0.9	1	23	397	420	397	420	0.94
11	13	2.3e-06	0.00017	22.0	0.9	1	23	426	448	426	448	0.97
12	13	1.7e-07	1.2e-05	25.6	1.1	1	23	454	476	454	476	0.99
13	13	1.5e-05	0.0011	19.4	3.1	2	23	483	505	482	505	0.96

Sequence Information

Coding Sequence: ATGGAAGAAATTATTGGTAAGGAAATCGTTAAAGTCGAGAACACTATATTTCTTAATGGCCAAACTTCAGAGGTCATAATTAGCGATCCTGAAACTGATACTGCAATATTAGCTAACGAGGATGTTCAAGAAGACTTGAATGAAGTTCTCTCACAAAATACCCACATAATACAAATTGTGACGGATTATGAATGTGTAACTTGTCATCGTATATTTCAATCCGAAGATATGCTGAAGGAACATTTAGAAGTGTGTAGAGAAGAAGATGACAGTACTGAAATATTGGAATTGCGAAGTATTGATACTTATGACTCAGAAGACGAAGCAAATGCTGATGACCCAGATGAATATCTCTTTGAAGATTCAAGCACTACTGATtcccaaaattcaaagaacAACAATGAGAAAGGAGTAATAAAACCAGTCCCAGACAGTCAGTGTCACTGTTGTGCCGAAGATCTGACCACTGCACACAGTGGGGGTGAATTTAAATGTCAGCATTGCAACTTGTCGTTTAAAAAGATGAGTTCCTTAGAAAGACACACGATTGTCGTTCACTGGGAGAATGATGCTATCAGTTGTACAGAATGTACAGAGGCTTTTCCTGACAAAAAAGCCTTGGATAAGCATCGCTATACGAAACATGCGAAGACaccaaaaatttataaATGCGAACCTTGTGACATGTATTTCTCACGTAATTATCATCTAAATCGACACAAAATGCAATCTGGATGTCATGGCGAGTTGCATAACACATTTTCATGTCAAgtttgcaataaaatttttactcgcAAAGATAATTTGCGCGAGCATTTACGCACTCATGCTGGTACGCCTCAACGACAAAAGAAGCCATGTAAACATTGCCCTAAGGAGTTTCATACAAACCAACAGCTTCTGATACACGAACGCATGCATACTGGGGAACGACCCATCGAGTGCGACCTTTGTAGTAAAACATTCCTATCCACCCTGGCGATGAAGAAGCATCGCCGAGTACACACTGGAGAAAAACCATTCGAATGCAAATTTTGTCAAAGAAAGTTCGCAGCTCGGGAAACTTTAAATCGGCATCAGCGAACTCACACTGGCGAGAAACCCCACGTCTGTCAATACTGTGGCAAATCGTTTATTCAAGCAGCACAATTGAGAGCGCACGTGTTTCATCATACAGGAGAAAATGGATTCTATTGTGACATTTGTGGCAAGGCGTTTAATCGCAAGGCCCGCTTAAACGTgcacaaaaaatttgttcacgAGGGAGCAACTCCGTTCAAATGCGAAGTCTGTGACAAGTCGTTTATGCGAAAAGAAGACCTGGCTAAGCACAAACTTCTTCACAGTGGCGTAAAACCATTCAAATGTGACAAATGTTCAAAATCATTTGCTGCCAAATCTTCTCTTCAAGCTCATATGAATACGCACAGACGGGAACCACCGCAGTCCTGCGCAGAATGCGGCCGCGCATTCATACGTCATGACTGTCTAATGCGTCACATCCGGACAAAGCATCGCGAACTTCTGGAAGATGTATTGGGTGAAGCTGAACATCGTCAGTTGCAAACGCAACTGCTTAATATTGCATCCAGCGCAGCTGCCAAACTGAAAACTGGAAAATCCACGGCTCTGACTAACGATCAACTGCTTAAGGCTATTGTTGAGCTTTTGACAATTCTCATTGAGGAAGATACTTTGCAGTTATTCGGATGGCCCAGTGCACCAATTCAGGACGTCTTGGAAGCTGTTATCAGACGTTGCGGTCATCAACCAATCACCTCAGACAGTGATAAACCATTTCCTGAACGATTGAGGGAGAACGTGAAACTACTTTTTACAGTTGTCATTGAAGATGACACTGTCAAATCATTATTAACCACGCAAACCGTCGACGAAGTCATTCAGCACGTTTTGAAGCTTTCAAAGGAGTAG
Protein Sequence: MEEIIGKEIVKVENTIFLNGQTSEVIISDPETDTAILANEDVQEDLNEVLSQNTHIIQIVTDYECVTCHRIFQSEDMLKEHLEVCREEDDSTEILELRSIDTYDSEDEANADDPDEYLFEDSSTTDSQNSKNNNEKGVIKPVPDSQCHCCAEDLTTAHSGGEFKCQHCNLSFKKMSSLERHTIVVHWENDAISCTECTEAFPDKKALDKHRYTKHAKTPKIYKCEPCDMYFSRNYHLNRHKMQSGCHGELHNTFSCQVCNKIFTRKDNLREHLRTHAGTPQRQKKPCKHCPKEFHTNQQLLIHERMHTGERPIECDLCSKTFLSTLAMKKHRRVHTGEKPFECKFCQRKFAARETLNRHQRTHTGEKPHVCQYCGKSFIQAAQLRAHVFHHTGENGFYCDICGKAFNRKARLNVHKKFVHEGATPFKCEVCDKSFMRKEDLAKHKLLHSGVKPFKCDKCSKSFAAKSSLQAHMNTHRREPPQSCAECGRAFIRHDCLMRHIRTKHRELLEDVLGEAEHRQLQTQLLNIASSAAAKLKTGKSTALTNDQLLKAIVELLTILIEEDTLQLFGWPSAPIQDVLEAVIRRCGHQPITSDSDKPFPERLRENVKLLFTVVIEDDTVKSLLTTQTVDEVIQHVLKLSKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00294686;
90% Identity: iTF_01474107;
80% Identity: -