Ttro005484.1
Basic Information
- Insect
- Trachelus troglodyta
- Gene Symbol
- lola
- Assembly
- GCA_030142635.1
- Location
- JARQTJ010000385.1:1751665-1755122[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.1 6.7e+03 -3.0 0.0 4 21 102 119 101 120 0.76 2 2 1.4e-08 1.8e-05 24.5 0.0 9 40 426 458 425 463 0.85
Sequence Information
- Coding Sequence
- ATGGAGGACGATCAGCAGTTTTGCTTAAGGTGGAATAATCATCAGAGTACGCTTGTCCAGAACTTCGATACCCTCTTAGAGAGTGGCACGTTGGTTGACTGCACCTTGGCGGCGGAGGGGAAGTCTTTAAAGGCCCACAAAGTGGTCCTCTCCGCGTGCAGTCCATTCTTTGAGGGCCTCCTCAGCGAACACTATGACAAGCATCCCGTGTTTATACTCAAGGATATTAAGTTCAAAGAACTCAAAGCCATGATGGACTACATGTATAAGGGAGAAGTAAATATCTCTCAAGACCAATTGGCAGCGCTCCTCAAGGCCGCCGAGTCCCTGCAAATCAAGGGTCTCTCGGAATGTAAAACGAGCGGCAAtagtggcggcggcggcggcggggGTGGCTGTGGCGGAAGGAGCGAGCCCAGACCACCGAAAGTCGTCTCACAGCCAACGGCGCCGTCGTTGGACATTCCCCACCCGTCTTCCGGTCTCACCATAGAAAAGAACAGCAAAGTTCCTAGGCAAAGTTTGACACAGGTCTCCGTCGGTGATCTGCCAGAAGACTCCGCCAGTCCCCAGCTCCCCAGAGGGCTCTCCTCCAGgGAAGGCTCGCAAAGTCCGACCAatgcgaaaagaaagaaaaggttTCGCGGTAGGAGCCTAGGCGACGACAATTCCGTTGAAAACCACGACGCGTCGAACTCGAGTGACATGCCCCAGCAAATGGGAGTTTCGGCACTCGCGATCGCGCCCGTTGCCAACGAAAAGTCACACGCCGACCCCACAGACTCTCTCGGTAGTTCAGTGCTAATGCAACAGCTGGCCAAACCTGCCGACGAGATGCTCCAGATGCCGCTGGAGAATCAACAGCCTAATGATAATTTGATAGAACCAAAGTCCGAGTACCTTGAGGATCCGGAGGAGAGCGTCGAGGATCTAACCCTCGATGACGACATGAACGATTTAAATGAGATGGAACAGGATACCAACAGAGCTGGCCCTTCCCATGAATCCTCCCAGCACCCTGGTGGGGGGGCGGGAGCGCGGGCTCGGTCGAGCGGGAATTTGAGTTATGGTGAAGGTGGTGGTGATGATGGTGACGGTGAGGGTATTAGCGCCTGCGATGGTGCTGAAGGTGCCCTGTGGGCCTCACATTTCCTCGAATGTAAAAAAGGCCCTAACTCGAGGCGACCTCGACCGGACGTTGACGTAGGCGCGTTGCTCAAGTCCCTGGCTAATAAGCAGGGTAGAAAATATAGCTTAGACTCGGTTAAGATGTCGCTGGACGCGATTTTGCAGCAGGGCGTTAGCACCACTCAGGCATCTGAAATGTATGGCATTAATCGCTCGACTCTGCAGttctatttgaaaaaattgaacgtCGTAAGAAGACGATGGAGACAACCTAGCAACTGGATGCAGCCTAGTCAGTCTTCGACTTGA
- Protein Sequence
- MEDDQQFCLRWNNHQSTLVQNFDTLLESGTLVDCTLAAEGKSLKAHKVVLSACSPFFEGLLSEHYDKHPVFILKDIKFKELKAMMDYMYKGEVNISQDQLAALLKAAESLQIKGLSECKTSGNSGGGGGGGGCGGRSEPRPPKVVSQPTAPSLDIPHPSSGLTIEKNSKVPRQSLTQVSVGDLPEDSASPQLPRGLSSREGSQSPTNAKRKKRFRGRSLGDDNSVENHDASNSSDMPQQMGVSALAIAPVANEKSHADPTDSLGSSVLMQQLAKPADEMLQMPLENQQPNDNLIEPKSEYLEDPEESVEDLTLDDDMNDLNEMEQDTNRAGPSHESSQHPGGGAGARARSSGNLSYGEGGGDDGDGEGISACDGAEGALWASHFLECKKGPNSRRPRPDVDVGALLKSLANKQGRKYSLDSVKMSLDAILQQGVSTTQASEMYGINRSTLQFYLKKLNVVRRRWRQPSNWMQPSQSST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00294592;
- 90% Identity
- iTF_00293065;
- 80% Identity
- iTF_01475561;